Posts about biology

Benefits of a Mediterranean Diet May Include Reduced Risk of Cognitive Impairment As We Age

Medical studies about healthy living are very complex and not easy to draw clear conclusions from. But the evidence continues to grow on the benefits of a healthy Mediterranean diet.

Mediterranean diet may prevent memory loss and dementia, study finds

The true diet is simple, plant-based cooking, with the majority of each meal focused on fruits and vegetables, whole grains, beans and seeds, with a few nuts and a heavy emphasis on extra-virgin olive oil. Fats other than olive oil, such as butter, are consumed rarely, if at all. And say goodbye to refined sugar or flour.

Meat can make a rare appearance, but usually only to flavor a dish. Instead, meals may include eggs, dairy and poultry, but in much smaller portions than in the traditional Western diet. However, fish, which are full of brain-boosting omega-3’s, are a staple.

“Eating a healthy plant-based diet is associated with better cognitive function and around 30% to 35% lower risk of cognitive impairment during aging,” lead author Claire McEvoy, assistant professor at Queen’s University Belfast

I am skeptical of the size of the risk reduction. It is seems decades of health studies show that precise measures are not that trustworthy. But it does seem that there are many benefits to a Mediterranean diet.

photo of fish dish

This is actually a photo of a dinner I enjoyed while in Malaysia (which just is one I had easy access to add to this post)

I have been taking this into account in my eating. I try to eat much more green leafy vegetable (though more is from my very low levels before). I try to reduce the amount of meat and increase the amount of fish and nuts. I try to eat enough fiber and I eat yogurt. I try to eat more fruits and vegetables in general. I try to reduce the amount of processed foods and sugar. My diet is far from great but it is much better than is was 20 years ago. I have probably been focused on doing better for over 10 years (post from 9 years ago: Healthy Diet, Healthy Living, Healthy Weight).

Related: Eat food. Not too much. Mostly plants.Big Fat LiePhysical Activity for Adults: Inactivity Leads to 5.3 Million Early Deaths a YearHow Healthy Is Squid for Us?Obesity Epidemic Explained – Kind Of

Simple Overview of Proteins

This webcasts provides a good, very simple, overview of proteins.

Learn more about proteins: How Lysozyme Protein in Our Tear-Drops Kill BacteriaMolecular Motor ProteinsFold.it, the Protein Folding Game

Molecular Motor Proteins

Webcast on amazing processes inside cells by Ron Vale.

Molecular motor proteins are fascinating enzymes that power much of the movement performed by living organisms. The webcast provides an overview of the motors that move along cytoskeletal tracks (kinesin and dynein which move along microtubules and myosin which moves along actin). The talk first describes the broad spectrum of biological roles that kinesin, dynein and myosin play in cells. The talk then discusses how these nanoscale proteins convert energy from ATP hydrolysis into unidirectional motion and force production, and compares common principles of kinesin and myosin. The talk concludes by discussing the role of motor proteins in disease and how drugs that modulate motor protein activity can treat human disease.

Ron Vale is a Professor of Cellular and Molecular Pharmacology at the University of California, San Francisco and an Investigator of the Howard Hughes Medical Institute. He is also the founder of the iBiology project.

Related: Animations of Motor Proteins Moving Material Inside CellsScience Explained: How Cells React to Invading VirusesLooking Inside Living Cells

Scientists Watch Single Cell Organisms Evolve Multicellular Trait in Response to Predation

The scientists used the ciliate predator Paramecium tetraurelia to select for the de novo evolution of multicellularity in outcrossed populations of C. reinhardtii. They show that multicellular life cycles that evolved were passed on to future generations (the change was heritable). The evolved multicellular life cycles are stable over thousands of asexual generations in the absence of predators. Because C. reinhardtii has no multicellular ancestors, these experiments represent a novel origin of multicellularity.

De novo origins of multicellularity in response to predation

Here we show that de novo origins of simple multicellularity can evolve in response to predation. We subjected outcrossed populations of the unicellular green alga Chlamydomonas reinhardtii to selection by the filter-feeding predator Paramecium tetraurelia. Two of five experimental populations evolved multicellular structures not observed in unselected control populations within ~750 asexual generations.

The control populations remained unicellular. The populations subjected to predation evolved in different ways including one that formed stereotypic eight-celled clusters (Fig. 1A), with an apparent unicellular and tetrad life stage.

electron microscope images of multicellular colonies from evolved populations

Scanning electron micrographs of representative multicellular colonies from evolved populations. (A) Shows an amorphous cluster from population B2. Cell number varies greatly between clusters in this clone and between clones in this population. (B) Shows an eight-celled cluster from population B5. Octads were frequently observed in both populations.

an external membrane is visible around both evolved multicellular colonies, indicating that they formed clonally via repeated cell division within the cluster, rather than via aggregation.

The article also provides details on the scientific inquiry process where theory meets practical realities of observation. I think these ideas are very important and we often gloss over such details. This article was shared as an open access article and is written so that those who are interested in science but are not scientists can understand, which is a valuable. The research was funded by USA National Science Foundation, the John Templeton Foundation, the NASA Astrobiology Institute, a NASA Postdoctoral Program Fellowship and a Packard Foundation Fellowship. And the researchers work at public and private universities. Such research should all be published in an open access manner.

Related: The Amazing Reality of Genes and The History of Scientific InquiryParasite Evolved from Cnidarians (Jellyfish etc.)Why Don’t All Ant Species Replace Queens in the Colony, Since Some DoScientific Inquiry Leads to Using Fluoride for Healthy TeethMechanical Gears Found in Jumping Insects

Hope Exists to Reverse Bee Colonies Collapse if We Take Action

photo of a bee on a flower

photo by Justin Hunter

The bee colony collapse disorder has been ongoing for more than 10 years and while some scientific understanding has been gained the complexity of the problem continues to stifle progress. The first post I wrote on this blog about colony collapse disorder was published in 2006.

As early as 2007 a virus was found to be one likely factor in bee colony collapse disorder. But progress has been slow especially since likely solutions were fought by those profiting from existing conditions (widespread use of powerful pesticides). In 2012, I wrote another post for this Curious Cat Science blog: Study of the Colony Collapse Disorder Continues as Bee Colonies Continue to Disappear.

Scientist unveils blueprint to save bees

Stefanie Christmann of the International Center for Agricultural Research in Dry Areas will present the results of a new study that shows substantial gains in income and biodiversity from devoting a quarter of cropland to flowering economic crops such as spices, oil seeds, medicinal and forage plants.

The UN conference is already debating new guidelines on pollinators that will recommend reducing and gradually phasing out the use of existing pesticides, but Christmann’s research suggests this can be done without financial pain or a loss of production.

The need for a change is increasingly evident. More than 80% of food crops require pollination but the populations of insects that do most of this work have collapsed. In Germany, this fall is by up to 75% over the past 25 years. Puerto Rico has seen an even sharper decline. Numbers are not available in most countries, but almost all report an alarming decline.

Related: Another Bee Study Finds CCD is Likely Due to Combination of Factors Including Pesticides (2013)The Study of Bee Colony Collapses Continues (2007)Europe Bans Certain Pesticides, USA Just Keeps Looking, Bees Keep Dying (2013)Apple Farmers Use Pigs Instead of Pesticides

Animations of Motor Proteins Moving Material Inside Cells

Very cool. This next video gives a bit more information on how these amazing parts of our cells move material around inside or cells.

This stuff is so interesting. I wish this type of interesting material and informative animations was what my biology education was like in k-12 instead of the boring stuff my classes were instead. I hope students today have better science classes than I did.

It is amazing how such mechanisms evolved to “walk” along transportation microtubules inside our cells.

Related: Molecular Motor Proteins webcast by Ron Vale, Professor of Cellular and Molecular Pharmacology at the University of California, San Francisco (35 minutes)Looking Inside Living CellsScience Explained: Cool Video of ATP Synthase, Which Provides Usable Energy to UsExploring Eukaryotic Cells

Cats Protect Newborns From Developing Asthma

Everyone should appreciate the value of cats (as we do, honoring cats in our blog’s name); yet some people seem oblivious to the greatness of cats. In another demonstration of what we gain by associating with cats, research has shown living with cats as newborns helps protect those with a specific gene variation from developing asthma.

Cats protect newborns against asthma

The results reveal that cats remove the increased risk of developing asthma among children with a particular variation of the gene 17q21, called TT, which has the strongest impact on whether or not a child could develop asthma.

Almost one in three children in the study carried the TT gene variant, regardless of whether or not their mother had asthma.

“it looks like the effect is linked to a particular gene-variant, which goes to show just how complex the development of asthma and allergies are. It’s not only about genes and the environment, but how the two interact, and there’s so much that we still don’t know,”

The research indicates that cats reduce the risk of childhood asthma, pneumonia, and bronchiolitis in genetically susceptible subjects.

And no, dogs do not provide this protection. As with most research the scientists have new paths of inquiry to follow based on these results. Lead author Jakob Stokholm suspects that the reasons cats have this effect but dogs do not, “could be related to the bacteria that cats carry and perhaps fungi or viruses that they bring into the home”. Those questions can be the topic of further research.

Related: Cat Allergy Vaccine Created (2011)Awesome Cat CamThe History of Domestic CatsParasites in the Gut Help Develop a Healthy Immune SystemHypoallergenic Cats (2006)The Amazing Reality of Genes and The History of Scientific Inquiry

Dr. Steve Goodman’s Work as a Field Biologist in Madagascar

Dr. Steve Goodman‘s work is a legendary Field Biologist and spends 9-10 months out of the year conducting research in other countries, with a focus on Madagascar for nearly 30 years. Learn more about the future of Madagascar’s biodiversity and research.

This video is from the great Brain Scoop channel with Emily Graslie; if you are not following that channel I highly recommend doing so for people interested in science.

Related: The Michael Jordan of Field BiologyInsect ArchitectureNew Life Form Found at South African Truck StopNeil Degrasse Tyson: Scientifically Literate See a Different World

Stanford Research Scientists Discover 99% of the Microbes Inside Us are Unknown to Science

Readers of this blog know I am fascinated by the human microbiome. It is amazing how much of our biology is determined by entities within us that are not us (at least not our DNA) (bacteria, viruses etc.). This whole area of study is very new and we have quite a bit to learn. There are scientists across the globe studying this area and learning a great deal.

Stanford study indicates that more than 99% of the microbes inside us are unknown to science

Of all the non-human DNA fragments the team gathered, 99 percent of them failed to match anything in existing genetic databases the researchers examined.

The “vast majority” of it belonged to a phylum called proteobacteria, which includes, among many other species, pathogens such as E. coli and Salmonella. Previously unidentified viruses in the torque teno family, generally not associated with disease but often found in immunocompromised patients, made up the largest group of viruses.

“We’ve doubled the number of known viruses in that family through this work,” Quake said. Perhaps more important, they’ve found an entirely new group of torque teno viruses. Among the known torque teno viruses, one group infects humans and another infects animals, but many of the ones the researchers found didn’t fit in either group. “We’ve now found a whole new class of human-infecting ones that are closer to the animal class than to the previously known human ones, so quite divergent on the evolutionary scale,” he said.

Related: We are Not Us Without The Microbes Within UsWebcasts on the Human MicrobiomePeople are Superorganisms With Microbiomes of Thousands of Species (2013)We Have Thousands of Viruses In Us All the Time (2015)Tracking the Ecosystem Within Us (2007)

Insect Architecture

In this webcast The Brain Scoop takes an interesting look at the homes of eusocial animals and other insects. The video includes many interesting details including that adult weaver ants can’t produce the silk used to weave leaves together so they pick up their larva and use them like a glue stick.

Related: For Many Crops Ants Can Provide Pest Protection Superior or Equal to Chemicals at a Much Lower CostWhy Don’t All Ant Species Replace Queens in the Colony, Since Some DoSymbiotic relationship between ants and bacteriaHuge Termite Mound in Nigeria

We are Not Us Without The Microbes Within Us

I Contain Multitudes is a wonderful book by Ed Young on the microbes within us.

Time and again, bacteria and other microbes have allowed animals to transcend their basic animalness and wheedle their way into ecological nooks and crannies that would be otherwise inaccessible; to settle into lifestyles that would be otherwise intolerable; to eat what they could not otherwise stomach; to succeed against their fundamental nature. And the most extreme examples of this mutual assured success can be found in the deep oceans, where some microbes supplement their hosts to such a degree that the animals can eat the most impoverished diets of all – nothing.

This is another book exploring the wonders of biology and the complexity of the interaction between animals and microbes.

For hundreds of years, doctors have used dioxin to treat people whose hearts are failing. The drug – a modified version of a chemical from foxglove plants – makes the heart beat more strongly, slowly, and regularly. Or, at least, that’s what it usually does. In one patient out of every ten, digoxin doesnt’ work. Its downfall is a gut bacterium called Eggerthella lenta, which converts the drug to an inactive and medically useless form. Only some strains of E. lenta do this.

The complex interactions within us are constantly at work helping us and occasionally causing problems. This obviously creates enormous challenges in health care and research on human health. See related posts: Introduction to Fractional Factorial Designed Experiments, “Grapefruit Juice Bugs” – A New Term for a Surprisingly Common Type of Surprising Bugs and 200,000 People Die Every Year in Europe from Adverse Drug Effects – How Can We Improve?.

Every person aerosolized around 37 million bacteria per hour. This means that our microbiome isn’t confined to our bodies. It perpetually reaches out into our environment.

Avoiding bacteria is not feasible. Our bodies have evolved with this constant interaction with bacteria for millions of years. When we are healthy bacteria have footholds that make it difficult for other bacteria to gain a foothold (as does our immune system fighting off those bacteria it doesn’t recognize or that it recognized as something to fight).

A few pages later he discusses the problem of hospital rooms that were constantly cleaned to kill bacteria and largely sealed to reduce airflow. What happened is those bacteria the sick people had in them were the bacteria that were flourishing (the number of other bacteria to compete for space was small). Opening the windows to welcome the outside air resulted in better results.

Outdoors, the air was full of harmless microbes from plants and soils. Indoors, it contained a disproportionate number of potential pathogens, which are normally rare or absent in the outside world

Human health is a fascinating topic. It is true antibiotics have provided us great tools in the service of human health. But we have resorted to that “hammer” far too often. And the consequences of doing so is not understood. We need those scientists exploring the complex interactions we contain to continue their great work.

Related: People are Superorganisms With Microbiomes of Thousands of Species (2013)Bacteria are Always Living in Our Bodies (2014)Gut Bacteria Explored as Medical Treatment – even for Cancer