Posts about Open Access

Fields Medalist Tim Gowers Takes Action To Stop Cooperating with Anti-Open Science Cartel

The Fields medal is know as the Nobel of mathematics. Tim Gowers was awarded the Fields medal in 1998 for contributions to functional analysis, making extensive use of methods from combinatorial theory. Tim Gowers is currently the Rouse Ball Professor of Mathematics at Cambridge University. He posted recently on his decision to stop supporting (with his actions, such as submitting paper and reviewing papers) the anti-open-science behavior of Elsevier (a particularly aggressive anti-open-science publisher that also has very bad pricing practices).

Elsevier — my part in its downfall

One method that they have for getting away with it is a practice known as “bundling”, where instead of giving libraries the choice of which journals they want to subscribe to, they offer them the choice between a large collection of journals (chosen by them) or nothing at all. So if some Elsevier journals in the “bundle” are indispensable to a library, that library is forced to subscribe at very high subscription rates to a large number of journals, across all the sciences, many of which they do not want. (The journal Chaos, Solitons and Fractals is a notorious example of a journal that is regarded as a joke by many mathematicians, but which libraries all round the world must nevertheless subscribe to.) Of course, given that libraries have limited budgets, this often means that they cannot subscribe to journals that they would much rather subscribe to, so it is not just libraries that are harmed, but other publishers, which is of course part of the motivation for the scheme.

Elsevier supports many of the measures, such as the Research Works Act, that attempt to stop the move to open access. They also supported SOPA and PIPA and lobbied strongly for them.

I also don’t see any argument at all against refusing to submit papers to Elsevier journals.

So I am not only going to refuse to have anything to do with Elsevier journals from now on, but I am saying so publicly. I am by no means the first person to do this, but the more of us there are, the more socially acceptable it becomes

Good for him. All we need is for more and more scientists, mathematicians and engineers to support open science with thier actions and open science will be the way things are. It is as simple as that. The outdated business practices of the old journals will die. Either the existing publishers will finally give up on their extremely outdated practices or they will be replaced.

Related: The Architecture of Access to Scientific KnowledgeMerck and Elsevier Publish Phony Peer-Review JournalThe Future of Scholarly Publication (2005)Science Journal Publishers Stay Stupid (2007) “It is time for the scientific community to give up on these journals and start looking to move to work with new organizations that will encourage scientific communication and advancement”

Royal Society Journal Embraces Open Access

Royal Society journal archive made permanently free to access

The Royal Society…journal archive – which includes the first ever peer-reviewed scientific journal – has been made permanently free to access online.

Around 60,000 historical scientific papers are accessible via a fully searchable online archive, with papers published more than 70 years ago now becoming freely available.

reasures in the archive include Isaac Newton’s first published scientific paper, geological work by a young Charles Darwin, and Benjamin Franklin’s celebrated account of his electrical kite experiment.

The move is being made as part of the Royal Society’s ongoing commitment to open access in scientific publishing.

Good for them. Slowly more and more are realizing clinging to old fashion publishing models are contrary to promoting science and scientific literacy.

Related: 340 Years of Royal Society Journals OnlineBritain’s Royal Society Experiments with Open Access (2006)8-10 Year Olds Research Published in Royal Society Journal

Journal of Emerging Investigators Will Publish Middle and High School Student Research Papers

The Journal of Emerging Investigators is a new journal for publishing research paper and reviews of research papers by middle school and high school students from any country.

The Journal of Emerging Investigators strives to provide students with as much access to original scientific writing as possible. With this in mind, all submissions are covered by an attribution non-commercial, no derivative license. This means that anyone is free to share, copy and distribute an unaltered article for non-commercial purposes.

Graduate students with substantial research experience will review the manuscripts.

All hypothesis driven science is acceptable for research articles. This includes, but is not limited to, life science, physics, chemistry, health, psychology, and physiology. Engineering articles are also accepted as long as there is a clear question and hypothesis being tested.

Hopefully this will encourage some students to give research a try. Advisors may submit items for publication (students have to have an mentor/teacher do the submitting.

Similar journals: The Journal of Experimental Secondary Science, open science :-)Canadian Young Scientist, closed science :-(

Related: 8-10 Year Olds Research Published in Royal Society JournalYouTube SpaceLab Experiment CompetitionOpen Access Engineering JournalsKids on Scientists: Before and After

A Possible Explanation for the Faster Than Light Result Anomaly

Faster-than-Light Neutrino Puzzle Claimed Solved by Special Relativity

So what is the satellites’ motion with respect to the OPERA experiment? These probes orbit from West to East in a plane inclined at 55 degrees to the equator. Significantly, that’s roughly in line with the neutrino flight path. Their relative motion is then easy to calculate.

So from the point of view of a clock on board a GPS satellite, the positions of the neutrino source and detector are changing. “From the perspective of the clock, the detector is moving towards the source and consequently the distance travelled by the particles as observed from the clock is shorter,” says van Elburg.

By this he means shorter than the distance measured in the reference frame on the ground.

The OPERA team overlooks this because it thinks of the clocks as on the ground not in orbit.

How big is this effect? Van Elburg calculates that it should cause the neutrinos to arrive 32 nanoseconds early. But this must be doubled because the same error occurs at each end of the experiment. So the total correction is 64 nanoseconds, almost exactly what the OPERA team observes.

It is great to see the scientific process at work. Those is support of the scientific method support open access science and this explanation is available via arxiv: Times Of Flight Between A Source And A Detector Observed From A GPS Satellite.

Related: Faster Than Light Speed Anomaly Reported by CERNMore Dark Matter Experiment ResultsThe Architecture of Access to Scientific Knowledge

The Architecture of Access to Scientific Knowledge

The Architecture of Access to Scientific Knowledge from lessig on Vimeo.

Larry Lessig speaks at CERN about the proper use of copyright and the moral case for open access. As I have written many times, I strongly believe our society is better off when science is open. I believe we now are allowing a few greedy institution (that seek to restrict science for the benefit of their organization) to pay our politicians to damage society for the benefit of a few donors.

Related: The Future of Scholarly PublicationToward a More Open Scientific Culture - Why Copyright Extension is a Very Bad IdeaPatent Gridlock is Blocking Developing Lifesaving DrugsBad Government, Closed AccessJohn Conyers Against Open ScienceScience CommonsPublic Library of Science

All About Circuits

All About Circuits is an online textbook covering electricity and electronics. Topics covered include: Basic Concepts of Electricity’ OHM’s Law; Electrical Safety; Series and Parallel Circuits; Physics of Conductors and Insulators; Solid-State Device Theory; Binary Arithmetic; Logic Gates; Switches; Digital Storage? It is a great resource. Enjoy.

Related: Textbook RevolutionOpen Access Education MaterialsHigh-quality Curricula and Education Resources for TeachersOnline Mathematics Textbooks

New Funding for arXiv Online Scientific Repository

The Cornell University Library is broadening the funding base for the arVix online scientific repository. Nearly 600,000 e-prints – research articles published online in physics, mathematics, statistics, computer science and related disciplines – now reside in arXiv, which is an open information source for hundreds of thousands of scientific researchers.

arXiv will remain free for readers and submitters, but the Library has established a voluntary, collaborative business model to engage institutions that benefit most from arXiv. “Keeping an open-access resource like arXiv sustainable means not only covering its costs, but also continuing to enhance its value, and that kind of financial commitment is beyond a single institution’s resources,” said Oya Rieger, Associate University Librarian for Information Technologies. “If a case can be made for any repository being community-supported, arXiv has to be at the top of the list.”

The 200 institutions that use arXiv most heavily account for more than 75 percent of institutional downloads. Cornell is asking these institutions for financial support in the form of annual contributions, and most of the top 25 have already committed to helping arXiv.

arXiv’s original dissemination model represented the first significant means to provide expedited access to scientific research well ahead of formal publication. Researchers upload their own articles to arXiv, and they are usually made available to the public the next day. arXiv, founded by physics professor Paul Ginsparg, has about 400,000 users and serves more than 2.5 million article downloads per month. Its 101,000 registered submitters live in nearly 200 countries.

arXiv is interconnected with many other scholarly information resources. These include the INSPIRE system being developed by supporting high-energy physics laboratories CERN, DESY, Fermilab and SLAC, as well as the Astrophysics Data System at Harvard University, another supporting institution. Read details about the operating principles of the new structure.

Related: Toward a More Open Scientific CultureSo, You Want to be an Astrophysicist?MIT Faculty Open Access to Their Scholarly ArticlesScience Commons: Making Scientific Research Re-useful

Fungus-gardening Ant Species Has Given Up Sex Completely

The complete asexuality of a widespread fungus-gardening ant, the only ant species in the world known to have dispensed with males entirely, has been confirmed by a team of Texas and Brazilian researchers.

photo of christian rabeling excavating ants in BrazilGraduate student Christian Rabeling excavating fungus-farming ant nests in Brasilia.

Most social insects—the wasps, ants and bees—are relatively used to daily life without males. Their colonies are well run by swarms of sterile sisters lorded over by an egg-laying queen. But, eventually, all social insect species have the ability to produce a crop of males who go forth in the world to fertilize new queens and propagate.

Queens of the ant Mycocepurus smithii reproduce without fertilization and males appear to be completely absent, report Christian Rabeling, Ulrich Mueller and their Brazilian colleagues in open access journal PLoS ONE this week.

“Animals that are completely asexual are relatively rare, which makes this is a very interesting ant,” says Rabeling, an ecology, evolution and behavior graduate student at The University of Texas at Austin. “Asexual species don’t mix their genes through recombination, so you expect harmful mutations to accumulate over time and for the species to go extinct more quickly than others. They don’t generally persist for very long over evolutionary time.”

Previous studies of the ants from Puerto Rico and Panama have pointed toward the ants being completely asexual. One study in particular, by Mueller and former graduate student Anna Himler (now at Arizona State University), showed that the ants reproduced in the lab without males, and that no amount of stress induced the production of males.

Scientists believed that specimens of male ants previously collected in Brazil in the 1960s could be males of M. smithii. If males of the species existed, it would suggest that—at least from time to time—the ants reproduce sexually.

Rabeling analyzed the males in question and discovered that they belonged to another closely related (sexually reproducing) species of fungus-farmer, Mycocepurus obsoletus, thus establishing that no males are known to exist for M. smithii. He also dissected reproducing M. smithii queens from Brazil and found that their sperm storage organs were empty.

Taken together with the previous studies of the ants, Rabeling and his colleagues have concluded that the species is very likely to be totally asexual across its entire range, from Northern Mexico through Central America to Brazil, including some Caribbean islands.

As for the age of the species, the scientists estimate the ants could have first evolved within the last one to two million years, a very young species given that the fungus-farming ants evolved 50 million years ago.

Rabeling says he is using genetic markers to study the evolution and systematics of the fungus-gardening ants and this will help determine the date of the appearance and genetic mechanism of asexual reproduction more precisely in the near future.

Full press release

Related: Bdelloid Rotifers Abandoned Sex 100 Million Years AgoAmazonian Ant Species is All Female, Reproduces By CloningFemale Sharks Can Reproduce AsexualityAmazon Molly Fish are All Female

Why do we Need Dark Energy to Explain the Observable Universe?

Why do we need dark energy to explain the observable universe?

Against all reason, the universe is accelerating its expansion. When two prominent research teams dropped this bombshell in 1998, cosmologists had to revise their models of the universe to include an enormous and deeply mysterious placeholder they called “dark energy.” For dark energy to explain the accelerating expansion, it had to constitute more than 70 percent of the universe. It joined another placeholder, “dark matter,” constituting 20 percent, in overshadowing the meager 4 percent that make up everything else—things like stars, planets, and people.

An accelerating wave of expansion following the Big Bang could push what later became matter out across the universe, spreading galaxies farther apart the more distant they got from the wave’s center. If this did happen, it would account for the fact that supernovae were dim- they were in fact shoved far away at the very beginning of the universe. But this would’ve been an isolated event, not a constant accelerating force. Their explanation of the 1998 observations does away with the need for dark energy.

And Smoller and Temple say that once they have worked out a further version of their solutions, they should have a testable prediction that they can use to see if the theory fits observations.

Another interesting example of the scientific inquiry process at work in cosmology.

Shouldn’t the National Academy of Science (NAS), a congressionally chartered institution, promote open science instead of erecting pay walls to block papers from open access? The paper (by 2 public school professors) is not freely available online. It seems like it will be available 6 months after publication (which is good) but shouldn’t the NAS do better? Delayed open access, for organizations with a focus other than promoting science (journal companies etc.), is acceptable at the current time, but the NAS should do better to promote science, I think.

Related: Physics from Universe to MultiverseLaws of Physics May Need a RevisionExtra-Universal MatterCosmology Questions Answered

Merck and Elsevier Publish Phony Peer-Review Journal

Elsevier is one of those publishers fighting open science. They try to claim that the government publishing government funded research in an open way will tarnish science. The argument makes no sense to me. Here is another crazy action on their part: they published a “journal” funded by Merck to promote Merck products. Merck Makes Phony Peer-Review Journal:

Merck cooked up a phony, but real sounding, peer reviewed journal and published favorably looking data for its products in them. Merck paid Elsevier to publish such a tome, which neither appears in MEDLINE or has a website, according to The Scientist.

What’s sad is that I’m sure many a primary care physician was given literature from Merck that said, “As published in Australasian Journal of Bone and Joint Medicine, Fosamax outperforms all other medications….” Said doctor, or even the average researcher wouldn’t know that the journal is bogus. In fact, knowing that the journal is published by Elsevier gives it credibility!

As I have said the journals fighting open science should have their credibility questioned. They are putting their outdated business model above science. We should not see organizations that are focused on closing science research through deceptive publicity efforts and lobbying efforts as credible.

Related: From Ghost Writing to Ghost Management in Medical JournalsMerck Faked a Research JournalMedical Study Integrity (or Lack Thereof)The Future of Scholarly PublicationFresh questions raised about prominent cardiologist’s role in “ghostwritten” 2001 meta-analysis of Vioxx trialsScience Commons: Making Scientific Research Re-usefulPublishers Continue to Fight Open Access to ScienceMisleading or Deceptive ConductPeter Suber Response to Rep. Conyers

MIT Faculty Open Access to Their Scholarly Articles

MIT faculty open access to their scholarly articles

In a move aimed at broadening access to MIT’s research and scholarship, faculty at the Massachusetts Institute of Technology have voted to make their scholarly articles available to the public for free and open access on the Web.

The new policy, which was approved unanimously at an MIT faculty meeting on Wednesday, March 18 and took immediate effect, emphasizes MIT’s commitment to disseminating the fruits of its research and scholarship as widely as possible.

Under the new policy, faculty authors give MIT nonexclusive permission to disseminate their journal articles for open access through DSpace, an open-source software platform developed by the MIT Libraries and Hewlett Packard and launched in 2002. The policy gives MIT and its faculty the right to use and share the articles for any purpose other than to make a profit. Authors may opt out on a paper-by-paper basis.

MIT’s policy is the first faculty-driven, university-wide initiative of its kind in the United States. While Harvard and Stanford universities have implemented open access mandates at some of their schools, MIT is the first to fully implement the policy university-wide as a result of a faculty vote. MIT’s resolution is built on similar language adopted by the Harvard Faculty of Arts & Sciences in 2008.

It is good to see scientists putting advancing science above outdated journal business models. It is a bit of a shame that we have to be happy for such a small thing but given the state of those fighting against open science it is good to see those in favor of open access to science make progress.

Related: John Conyers Fights Open ScienceAnger at Anti-Open Access PRThe Future of Scholarly Publication

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