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October 5, 2008

Milestones on the Voyage to the Bottom of the Sea

Dive! Dive! Dive!

0 FEET: EPIPELAGIC ZONE
Ample sunlight penetrates down to 650 feet, making photosynthesis possible. With abundant plant life (read: food), this zone is the most densely populated with fish.

656 FEET: MESOPELAGIC ZONE
Too deep to support photosynthesis: The fish that survive here are sit-and-wait predators that tend to have large mouths and specialized retinas to increase light reception.

1,640 feet: Maximum diving depth of the blue whale.
1,969 feet: The Deep Sound Channel, a layer in which acoustic signals travel far and fast.
1,969 feet: Maximum diving depth of nuclear-powered attack subs.

3281 FEET: BATHYPELAGIC ZONE
The ocean is dark at this level; the only glow is from bioluminescent animals. There are no living plants, and creatures subsist by eating the debris that falls from the levels above, including dead or dying fish and plankton.

3,281 feet: Maximum diving depth of the sperm whale. To navigate in the darkness, these whales emit high pitched sounds and use echoes to determine the location of prey.
3,937 feet: Maximum diving depth of the leatherback sea turtle.
4,000 feet: The domain of the Pacific sleeper shark, the largest toothed shark ever photographed. It can reach lengths of 28 feet.

5,187 feet: Maximum diving depth of the elephant seal.

13,123 FEET: ABYSSOPELAGIC ZONE
In the pitch-dark of the abyss, there is no light at all, the water temperature is near freezing. Of the few creatures found at these crushing depths, most are blind and have long tentacles - tiny invertebrates such as shrimp, basket stars, and small squids.

19,685 FEET: HADOLPELAGIC ZONE
Despite the intense pressure and frigid temperature in the deepwater trenches and canyons, life still exists here, especially near hydrothermal vents on the ocean floor. Invertebrates such as starfish actually thrive.

Related: Ocean Life - Giant Star Fish and More in Antarctica - ocean related posts - Female Sharks Can Reproduce Alone

September 29, 2008

Tidal Turbine Farms to Power 40,000 Homes

Scotland Plans World’s First Tidal Turbine Farms

Scottish Power Renewables will apply for planning permission next year to build the two farms in Northern Ireland’s seabed. The turbines will be manufactured in Scotland in an intentional boost to the country’s green-collar job market. The 98-foot structures have been tested to operate in water as deep as 328 feet, and they spin slow enough to allow marine life to avoid the 66-foot blades.

New York City installed its first turbine for their tidal power farm earlier this month, but the Scottish plan differs in that the farms will be located in the open sea, not a river or straight.

Project aims to harness sea power

Projects on the firth could be operational by 2020… The Scottish and Irish sites would host up to 60 of the turbines - 20 at each site - generating 60 megawatts of power for up to 40,000 homes.

Related: Generating Electricity from the Ocean - Commercial Wave Project - World’s First Commercial-Scale Subsea Turbine - posts on energy

September 7, 2008

Bill Nye the Science Guy, Interview

Bill Nye the Science Guy Makes Green “Stuff Happen”

One of your first “Stuff Happens” episodes is about breakfast. What’s so special about breakfast and the environment?
Are you kidding? It’s the most important meal of the day. It had the iconic story that North American pigs - from where we get bacon - I presume unwillingly are fed feed made with South American anchovies (and herrings and sardines). Farmers say eating fish helps their animals grow to that wonderfully ample size consumers want. Because of this, we’re accidentally destroying an ecosystem. It’s the story of stories.

How so?
We’re seriously depleting the world’s anchovy population and leaving the penguins and South American seabirds with nothing to eat. These birds are dangerously close to starving because the anchovy and sardine populations have been decimated.

What can we do?
Strange as it may seem, you could eat more anchovies. This would raise the price of the fish and make anchovy fish feed more costly and less desirable to pig farmers. Also eat organic bacon from pigs raised on 100% agricultural feed. If you’re looking for the true organic meat products, make sure it’s grass-fed only.

Related: Pigs Instead of Pesticides - Interview of Steve Wozniak - The Engineer That Made Your Cat a Photographer - Interview with Donald Knuth

July 22, 2008

Microbes Beneath the Sea Floor

This stuff is cool. Here is the full press release from Penn State, Microbes beneath sea floor genetically distinct

Tiny microbes beneath the sea floor, distinct from life on the Earth’s surface, may account for one-tenth of the Earth’s living biomass, according to an interdisciplinary team of researchers, but many of these minute creatures are living on a geologic timescale.

“Our first study, back in 2006, made some estimates that the cells could double every 100 to 2,000 years,” says Jennifer F. Biddle, PhD. recipient in biochemistry and former postdoctoral fellow in geosciences, Penn State. Biddle is now a postdoctoral associate at the University of North Carolina, Chapel Hill.

The researchers looked at sediment samples from a variety of depths taken off the coast of Peru at Ocean Drilling Site 1229. They report their findings in today’s (July 22) online issue of the Proceedings of the National Academy of Sciences.

“The Peruvian Margin is one of the most active surface waters in the world and lots of organic matter is continuously being deposited there,” says Christopher H. House, associate professor of geoscience. “We are interested in how the microbial world differs in the subsea floor from that in the surface waters.”

The researchers used a metagenomic approach to determine the types of microbes residing in the sediment 3 feet, 53 feet, 105 feet and 164 feet beneath the ocean floor. The use of the metagenomics, where bulk samples of sediment are sequences without separation, allows recognition of unknown organism and determination of the composition of the ecosystem.

“The results show that this subsurface environment is the most unique environment yet studied metagenomic approach known today,” says House. “The world does look very different below the sediment surface.” He notes that a small number of buried genetic fragments exist from the water above, but that a large portion of the microbes found are distinct and adapted to their dark and quiet world.

The researchers, who included Biddle; House; Stephan C. Schuster, associate professor; and Jean E. Brenchley, professor, biochemistry and molecular biology, Penn State; and Sorel Fitz-Gibbon, assistant research molecular biologist at the Center for Astrobiology, UCLA, found that a large percentage of the microbes were Archaea, single-celled organisms that look like Bacteria but are different on the metabolic and genetic levels. The percentage of Archaea increases with depth so that at 164 feet below the sea floor, perhaps 90 percent of the microbes are Archaea. The total number of organisms decreases with depth, but there are lots of cells, perhaps as many as 1,600 million cells in each cubic inch.
(more…)

July 15, 2008

A Whale of a Turbine

A whale of a turbine

a flipperlike prototype is generating energy on Canada’s Prince Edward Island, with twin, bumpy-edged blades knifing through the air. And this summer, an industrial fan company plans to roll out its own whale-inspired model - moving the same amount of air with half the usual number of blades and thus a smaller, energy-saving motor.

Some scientists were sceptical at first, but the concept now has gotten support from independent researchers, most recently some Harvard engineers who wrote up their findings in the respected journal Physical Review Letters.

when models of the bumpy flippers were tested in a wind tunnel, Fish and his colleagues found something interesting. The flippers could be tilted at a higher angle before stall occurred.

The scientific literature had scant reference to the flipper bumps, called tubercles. Fish reasoned that because the whale’s flippers remained effective at a high angle, the mammal was therefore able to manoeuvre in tight circles. In fact, this is how it traps its prey, surrounding smaller fish in a “net” of bubbles that they are unwilling to cross.

In 2004, along with engineers from the US Naval Academy and Duke University, Fish published hard data: Whereas a smooth-edged flipper stalled at less than 12 degrees, the bumpy, “scalloped” version did not stall until it was tilted more than 16 degrees - an increase of nearly 40 percent.

Fish then partnered with Canadian entrepreneur Stephen Dewar to start WhalePower, a Toronto-based company that licenses the technology to manufacturers.

It has all been a bit of a culture shock for Fish, who is more at home in the open world of academia than the more secretive realm of inventions and patents. Two decades ago, his only motivation was to figure out what the bumps were for.

“I sort of found something that’s in plain sight,” he says. “You can look at something again and again, and then you’re seeing it differently.”

Related: Finspiration, Whale-Inspired Wind Turbines - Deep-Sea Denizen Inspires New Polymers - Wind Power Technology Breakthrough - Engineer Revolutionizing Icemakers

May 29, 2008

Bacteria “Feed” on Earth’s Ocean-Bottom Crust

Bacteria “Feed” on Earth’s Ocean-Bottom Crust

Once considered a barren plain dotted with hydrothermal vents, the seafloor’s rocky regions appear to be teeming with microbial life, say scientists

“Initial research predicted that life could in fact exist in such a cold, dark, rocky environment,” said Santelli. “But we really didn’t expect to find it thriving at the levels we observed.” Surprised by this diversity, the scientists tested more than one site and arrived at consistent results, making it likely, according to Santelli and Edwards, that rich microbial life extends across the ocean floor. “This may represent the largest surface area on Earth for microbes to colonize,” said Edwards.

Santelli and Edwards also found that the higher microbial diversity on ocean-bottom rocks compared favorably with other life-rich places in the oceans, such as hydrothermal vents. These findings raise the question of where these bacteria find their energy, Santelli said.

“We scratched our heads about what was supporting this high level of growth,” Edwards said. With evidence that the oceanic crust supports more bacteria than overlying water, the scientists hypothesized that reactions with the rocks themselves might offer fuel for life.

Why doesn’t this stuff make the news over what some celebrity did or politician said… (well I must admit I am just guessing since I don’t actually watch the news or read the mass media much - other than some science, investing or economics content). Oh well, at least you get to read the Curious Cat Science blog and find out about some of the cool stuff being learned every day.

Related: Life Far Beneath the Ocean - Clouds Alive With Bacteria - Bacterium Living with High Level Radiation - Giant Star Fish and More in Antarctica

May 22, 2008

Life Far Beneath the Ocean

Huge hidden biomass lives deep beneath the oceans

Recently, he and his colleagues examined samples of a mud core extracted from between 860 metres and 1626 metres beneath the sea floor off the coast of Newfoundland. They found simple organisms known as prokaryotes in every sample. Prokaryotes are organisms that often have just one cell. Their peculiarity is that, unlike any other form of life, their DNA is not neatly packed into a nucleus.

Where cells living so far beneath the sea floor could have come from remains a mystery. They may have been gradually buried in sediment as millions of years passed by, and adapted to the increasing temperatures and pressure, he says.

Another possibility is that they were sucked deep into the mud from the sea water above. Hydrothermal vents pulse hot water out of the seabed and into the ocean. This creates a vacuum in the sediment, which draws fresh sea water into the marine aquifer.

It is important to understand the way the cells got down there, because that has implications for their age. The cells are not very active and according to Parkes they have very few predators. “We find very few viruses, for example, down there,” he says. “At the surface, if you don’t divide you get eaten. But if there are no predators, the pressure to reproduce decreases and you can spend more energy on repairing your damaged molecules.”
Ancient life

This means it is conceivable – but unproven – that some of the cells are as old as the sediment. At 1.6 km beneath the sea, that’s 111 million years old. But in an underworld where cells divide excruciatingly slowly, if at all, age tends to lose its relevance, says Parkes.

More very cool stuff, this stuff is fun.

Related: Bacteria Frozen for 8 Million Years In Polar Ice Resuscitated - Life Untouched by the Sun - Plants, Unikonts, Excavates and SARs

May 11, 2008

Running Out of Fish

I have posted before about the overfishing problems: Fishless Future - SelFISHing - Chinook Salmon Vanish Without a Trace. Here is an emotional article on the problem - How the world’s oceans are running out of fish

Ninety years of industrial-scale exploitation of fish has, he and most scientists agree, led to ‘ecological meltdown’. Whole biological food chains have been destroyed.

In 2002, the year an EU report revealed that the Senegalese fish biomass had declined 75 per cent in 15 years, Brussels bought rights for four years’ fishing of tuna and bottom-dwelling fish on the Senegal coasts, for just $4m a year. In 2006, access for 43 giant EU factory fishing vessels to Mauritania’s long coastline was bought for £24.3m a year. It’s estimated that these deals have put 400,000 west African fishermen out of work; some of them now take to the sea only as ferrymen for desperate would-be migrants to the Canary Islands and Europe.

Protecting up to 40 per cent of the world’s oceans in permanent refuges would enable the recovery of fish stocks and help replenish surrounding fisheries. ‘The cost, according to a 2004 survey, would be between £7bn and £8.2bn a year, after set-up. But put that against the £17.6bn a year we currently spend on harmful subsidies that encourage overfishing.’

The Newfoundland cod fishery, for 500 years the world’s greatest, was exhausted and closed in 1992, and there’s still no evidence of any return of the fish. Once stocks dip below a certain critical level, the scientists believe, they can never recover because the entire eco-system has changed.
May 6, 2008

Pioneers of the Pacific

Pioneers of the Pacific

how could a Neolithic people with simple canoes and no navigation gear manage to find, let alone colonize, hundreds of far-flung island specks scattered across an ocean that spans nearly a third of the globe?

Answers have been slow in coming. But now a startling archaeological find on the island of Éfaté, in the Pacific nation of Vanuatu, has revealed an ancient seafaring people, the distant ancestors of today’s Polynesians, taking their first steps into the unknown. The discoveries there have also opened a window into the shadowy world of those early voyagers.

While the Lapita left a glorious legacy, they also left precious few clues about themselves. What little is known or surmised about them has been pieced together from fragments of pottery, animal bones, obsidian flakes, and such oblique sources as comparative linguistics and geochemistry. Although their voyages can be traced back to the northern islands of Papua New Guinea, their language—variants of which are still spoken across the Pacific—came from Taiwan. And their peculiar style of pottery decoration, created by pressing a carved stamp into the clay, probably had its roots in the northern Philippines.

Related: Ancient Greek Technology 1,000 Years Early - Aztec Math - Prayer Book Reveals Lost Archimedes Work Studying Ideas at Heart of Calculus

April 15, 2008

Turtle Camps in Malaysia

Drawing of sea turtles

Pelf Nyok has posted drawing of turtle camps students that she taught in Malaysia. On the image shown on the left:

The third poster shows the threats that our turtles are facing — a turtle is trapped in a fisherman’s net, a turtle is consuming a plastic bag, which it mistakes as a jellyfish, and there are rubbish on the sea floor.

Pelf is on her way to the USA for turtle conservation training on the Asian Scholarship Program for in-situ Chelonian Conservation:

a 4-month scholarship, and involves professional training in the conservation of turtles (including sea turtles, freshwater turtles and tortoises, I presume). The flow of the program has yet to be finalized but according to the Director of the Program, we (the Laotian student and I) would be spending one month visiting turtle scientists and turtle research centers in New Jersey, Tennessee, Florida and maybe California.

And the remaining 3 months would be spent at the Wetlands Institute at Stone Harbor, New Jersey. The training will be conducted at the Wetlands Institute, together with other local participants.

(more…)

April 14, 2008

Bikini Atoll 50 Years Later

Nuked coral reef bounces back

Three islands of Bikini Atoll were vapourised by the Bravo hydrogen bomb in 1954, which shook islands 200 kilometres away. Instead of finding a bare underwater moonscape, ecologists who have dived it have given the 2-kilometre-wide crater a clean bill of health.

“It was fascinating – I’ve never seen corals growing like trees outside of the Marshall Islands,” says Zoe Richards of the ARC Centre of Excellence for Coral Reef Studies in Australia. Richards and colleagues report a thriving ecosystem of 183 species of coral, some of which were 8 metres high. They estimate that the diversity of species represents about 65% of what was present before the atomic tests. The ecologists think the nearby Rongelap Atoll is seeding the Bikini Atoll, and the lack of human disturbance is helping its recovery.

“When I put the Geiger counter near a coconut, which accumulates radioactive material from the soil, it went berserk,” says Beger.

Related: Quake Lifts Island Ten Feet Out of Ocean - Bacterium Living with High Level Radiation - Artic Seed Vault

ASU Science Studio Podcasts

Science Studio offers podcasts by the Arizona State University School of Life Sciences with professors discussing science; it is another excellent source of science podcasts. Podcasts include:

  • Of Whales, Fish and Men: Managing Marine Reserves - With 90% of the world’s fisheries in a state of collapse, the questions around establishing marine reserves, monitoring, and species/stock recovery take on critical dimensions. But how do decision-makers, stakeholders, and the public formulate effective conservation policies; ones right for their community?
  • Biology on Fire - Regents’ Professor, Mac Arthur Fellow, author and a world’s expert on fire and fire ecology Stephen Pyne talks about how fire, its use, misuse, and its biological nature have shaped our world, before and because of man, and learn how policies of the past still reverberate in our present, in Arizona and globally.
  • Giant Insects: Not just in B movies - Professor Jon Harrison sheds light on the evolution of his scientific career and nature’s biggest order: arthropods. How big is big? In the Paleozoic, cockroaches were the size of housecats and dragonflies the size of raptors.
  • Special Feature: Building a science career - One of the most highly cited ecologists in the world, Jane Lubchenco trod her own unique path to success. In this live recording with the Association for Women in Science, she explains how assertiveness, the art of negotiation, and knowing the currency for promotion and tenure can make the difference between achieving balance between family and career and dropping out the leaky academic pipeline that leads to advancement.

These podcasts are great way to use the internet to serve the mission of universities: to educate. And a great way to promote science.

Related: Lectures from the Stanford Linear Accelerator Center - UC-Berkeley Course Videos - Science Podcast Libraries - Communicating Science to the Public

April 10, 2008

Mutualism - Inter-species Cooperation

Shrimp with Goby Fish

A Mutual Affair by Olivia Judson

I’d like to introduce you to one of my favorite animals: the shrimp goby. These pretty little fish lead lives of enviable indolence. As their name suggests, they live with shrimp (often, a pair). The shrimp build and maintain a burrow, which the goby and shrimp live in together. Each shrimp works hard, shoveling sand out of the front entrance like a miniature bulldozer. As soon as it’s delivered the rubble to a suitable distance, it shoots back into the burrow.

The front entrance of the burrow is often reinforced with bits of shell and coral — all of which is done by the shrimp. The goby just sits in the entrance of the burrow, keeping guard and warning the shrimp, which is nearly blind, of danger. At any sign of danger — a diver coming too close, a passing predator — the goby darts into the burrow. If the goby zooms in, the shrimp hastily retreats deep inside. And before the shrimp emerges from the burrow, it touches the goby’s tail with its long antennae. To show it’s safe to come out, the goby gently wiggles its tail. When the shrimp is out of the burrow, it keeps one antenna touching the goby. If the goby suddenly retreats, so does the shrimp.

These animals are dependent on each other. Remove the fish, and the shrimp stops burrowing; the shrimp forage while burrowing, so without a fish, they grow more slowly, too. The shrimp need their guard goby. And the guard goby needs its shrimp: deny the goby shelter in a burrow, and it will promptly be killed by predators (yes, someone did the experiment). The shrimp keep the goby clean, too: they groom it.

photo by Boogies with Fish

Related: Leafhopper Feeding a Gecko - Cool Crow Research - Dolphin Rescues Beached Whales - Orcas Create Wave to Push Seal Off Ice

March 28, 2008

Squid Materials Engineering

Scientists find that squid beak is both hard and soft

The sharp beak of the Humboldt squid is one of the hardest and stiffest organic materials known. Engineers, biologists, and marine scientists at the University of California, Santa Barbara, have joined forces to discover how the soft, gelatinous squid can operate its knife-like beak without tearing itself to pieces.

The key to the squid beak lies in the gradations of stiffness. The tip is extremely stiff, yet the base is 100 times more compliant, allowing it to blend with surrounding tissue. However, this only works when the base of the beak is wet. After it dries out, the base becomes similarly stiff as the already desiccated beak tip.

“You can imagine the problems you’d encounter if you attached a knife blade to a block of Jell-o and tried to use that blade for cutting. The blade would cut through the Jell-o at least as much as the targeted object. In the case of the squid beak, nature takes care of the problem by changing the beak composition progressively, rather than abruptly, so that its tip can pierce prey without harming the squid in the process. It’s a truly fascinating design!”

“If we could reproduce the property gradients that we find in squid beak, it would open new possibilities for joining materials,” explained Zok. “For example, if you graded an adhesive to make its properties match one material on one side and the other material on the other side, you could potentially form a much more robust bond,” he said. “This could really revolutionize the way engineers think about attaching materials together.”

Related: Deep-Sea Giant Squid - Self Healing Plastic - Sea Slug Photo Gallery

March 25, 2008

Ballast-free Ships

ballast-free ship’ could cut costs while blocking aquatic invaders

University of Michigan researchers are investigating a radical new design for cargo ships that would eliminate ballast tanks, the water-filled compartments that enable non-native creatures to sneak into the Great Lakes from overseas. At least 185 non-native aquatic species have been identified in the Great Lakes, and ballast water is blamed for the introduction of most—including the notorious zebra and quagga mussels and two species of gobies.

This week, the U.S. Saint Lawrence Seaway Development Corp. will implement new rules designed to reduce Great Lakes invaders. Ships will be required to flush ballast tanks with salt water before entering the Seaway, a practice corporation officials describe as an interim measure, not a final solution.

Instead of hauling potentially contaminated water across the ocean, then dumping it in a Great Lakes port, a ballast-free ship would create a constant flow of local seawater through a network of large pipes, called trunks, that runs from the bow to the stern, below the waterline.

“In some ways, it’s more like a submarine than a surface ship,” Parsons said. “We’re opening part of the hull to the sea, creating a very slow flow through the trunks from bow to stern.

Related: articles on invasive plants - Invasive Plants: Tamarisk - Sails for Modern Cargo Ships

March 21, 2008

Giant Star Fish and More in Antarctica

photo of giant starfish

Photo by John Mitchell, New Zealand’s National Institute of Water and Atmospheric Research. Read a great deal about the New Zealand Census of Antarctic Marine Life project: 26 scientists and 18 crew took a 50-day voyage aboard RV Tangaroa in February-March 2008.

Benthic invertebrates in Antarctica are well known for their large size. This feature, known as “gigantism” is common amongst certain groups including sea spiders, sponges, isopods, starfish, and amphipods. The phenomenon is a subject of intense scientific investigation, but there are many contributing factors.

Slow growth rates, late reproductive maturation, prolonged periods of embryonic development, and low predation rates that are typical of Antarctic waters contribute to long life-spans for many species and can also result in large size animals. Animal physiology is thought to play a role as well, as those groups that require large amounts of calcium should not, in theory, grow well in Antarctic waters. This is because the calcium carbonate (needed for growth of shells, or starfish ‘tests’) has low solubility in very cold seawater. Yet starfish, which have a calcareous exoskeleton or ‘test’ which needs lots of calcium, can reach much larger sizes than found in New Zealand waters, as seen in [photo].

Another crucial part of the story is that the low sea temperatures allow more oxygen to be dissolved in the sea water than in warmer latitudes. Sea spiders for example are not only larger, but reach more than 1000 times the weight of most temperate species. Amphipod crustaceans in the Southern Ocean are also large; more than five times as long as the largest temperate species.

Related: Ocean Life - Arctic Sharks - Antarctic Fish “Hibernate” in Winter - Lake Under 2 Miles of Ice

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