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August 9, 2008

Photos of Parfrey’s Glen, Wisconsin

John Hunter Durwood Glen

photo of Yellow Flower in Parfreys Glen

See more photos from my visit to Parfrey’s Glen Natural Area in Wisconsin, about an hour outside of Madison. It really was amazingly beautiful - the pictures do not do it justice. The Parfrey’s Glen trail is under a mile but well worth visiting. If you want to hike more try the Ice Age National Scenic Trail or nearby Devil’s Lake State Park. The top photo is of me (John Hunter) at nearby Durwood’s Glen. The yellow flower is from Parfrey’s Glen.

Photo of yellow flower by John Hunter is available for use: Creative Commons Attribution-Share Alike (see requirements for use).

Related: Hoh Rain Forest and Ruby Beach, Olympic National park - C&O Towpath - Monocacy Aqueduct, Maryland - Nature Recreation Declining - Curious Cat photo travelogues - Bull Run Trail, Virginia

Parfrey’s Glen is Wisconsin’s first State Natural Area, is a spectacular gorge deeply incised into the sandstone conglomerate of the south flank of the Baraboo Hills. The exposed Cambrian strata provide excellent opportunities for geological interpretation. The walls of the glen - a Scottish word for a narrow, rocky ravine - are sandstone with embedded pebbles and boulders of quartzite.
July 26, 2008

Life After the Chernobyl Nuclear Accident

Silent Spring by Lauren Monaghan, Cosmos

Ever since, a 30 km ‘exclusion zone’ has existed around the contaminated site, accessible to those with special clearance only. It’s quite easy, then, to conjure an apocalyptic vision of the area; to imagine an eerily deserted wasteland, utterly devoid of life.

But the truth is quite the opposite. The exclusion zone is teeming with wildlife of all shapes and sizes, flourishing unhindered by human interference and seemingly unfazed by the ever-present radiation. Most remarkable, however, is not the life buzzing around the site, but what’s blooming inside the perilous depths of the reactor.

Sitting at the centre of the exclusion zone, the damaged reactor unit is encased in a steel and cement sarcophagus. It’s a deathly tomb that plays host to about 200 tonnes of melted radioactive fuel, and is swarming with radioactive dust.

But it’s also the abode of some very hardy fungi which researchers believe aren’t just tolerating the severe radiation, but actually harnessing its energy to thrive.

“Our findings suggest that [the fungi] can capture the energy from radiation and transform it into other forms of energy that can be used for growth,” said microbiologist Arturo Casadevall from the Albert Einstein College of Medicine at Yeshiva University in New York, USA.

Taken together, the researchers think their results do indeed hint that fungi can live off ionising radiation, harnessing its energy through melanin to somehow generate a new form of biologically usable growing power.

If they’re right, then this is powerful stuff, said fungal biologist Dee Carter from the University of Sydney. The results will challenge fundamental assumptions we have about the very nature of fungi, she said.

It also raises the possibility that fungi might be using melanin to secretly harvest visible and ultraviolet light for growth, adds Casadevall. If confirmed, this will further complicate our understanding of these sneaky organisms and their role in ecosystems.

Pretty amazing stuff. It really is great all that nature gives us to study and learn about using science.

Related: Radiation Tolerant Bacteria - Not Too Toxic for Life - Bacterium Living with High Level Radiation - What is an Extremophile?

July 19, 2008

Leopard Bests Crocodile

photo of a leopard killing a crocodile

Leopard savaging a crocodile caught on camera:

A series of incredible pictures taken at a South African game reserve document the first known time that a leopard has taken on and defeated one of the fearsome reptiles. The photographs were taken by Hal Brindley, an American wildlife photographer, who was supposed to be taking pictures of hippos from his car in the Kruger National Park.

The giant cat raced out of cover provided by scrub and bushes to surprise the crocodile, which was swimming nearby. A terrible and bloody struggle ensued. Eventually, onlookers were amazed to see the leopard drag the crocodile from the water as the reptile fought back.

Eventually the big cat was able to sit on top of the reptile and suffocate it. In the past, there have been reports of crocodiles killing leopards, but this is believed to the first time that the reverse scenario has been observed.

Related: Water Buffaloes, Lions and Crocodiles Oh My - Far Eastern Leopard, the Rarest Big Cat - Leaping Tigress - Bornean Clouded Leopard

July 6, 2008
April 15, 2008

Turtle Camps in Malaysia

Drawing of sea turtles

Pelf Nyok has posted drawing of turtle camps students that she taught in Malaysia. On the image shown on the left:

The third poster shows the threats that our turtles are facing — a turtle is trapped in a fisherman’s net, a turtle is consuming a plastic bag, which it mistakes as a jellyfish, and there are rubbish on the sea floor.

Pelf is on her way to the USA for turtle conservation training on the Asian Scholarship Program for in-situ Chelonian Conservation:

a 4-month scholarship, and involves professional training in the conservation of turtles (including sea turtles, freshwater turtles and tortoises, I presume). The flow of the program has yet to be finalized but according to the Director of the Program, we (the Laotian student and I) would be spending one month visiting turtle scientists and turtle research centers in New Jersey, Tennessee, Florida and maybe California.

And the remaining 3 months would be spent at the Wetlands Institute at Stone Harbor, New Jersey. The training will be conducted at the Wetlands Institute, together with other local participants.

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April 10, 2008

Mutualism - Inter-species Cooperation

Shrimp with Goby Fish

A Mutual Affair by Olivia Judson

I’d like to introduce you to one of my favorite animals: the shrimp goby. These pretty little fish lead lives of enviable indolence. As their name suggests, they live with shrimp (often, a pair). The shrimp build and maintain a burrow, which the goby and shrimp live in together. Each shrimp works hard, shoveling sand out of the front entrance like a miniature bulldozer. As soon as it’s delivered the rubble to a suitable distance, it shoots back into the burrow.

The front entrance of the burrow is often reinforced with bits of shell and coral — all of which is done by the shrimp. The goby just sits in the entrance of the burrow, keeping guard and warning the shrimp, which is nearly blind, of danger. At any sign of danger — a diver coming too close, a passing predator — the goby darts into the burrow. If the goby zooms in, the shrimp hastily retreats deep inside. And before the shrimp emerges from the burrow, it touches the goby’s tail with its long antennae. To show it’s safe to come out, the goby gently wiggles its tail. When the shrimp is out of the burrow, it keeps one antenna touching the goby. If the goby suddenly retreats, so does the shrimp.

These animals are dependent on each other. Remove the fish, and the shrimp stops burrowing; the shrimp forage while burrowing, so without a fish, they grow more slowly, too. The shrimp need their guard goby. And the guard goby needs its shrimp: deny the goby shelter in a burrow, and it will promptly be killed by predators (yes, someone did the experiment). The shrimp keep the goby clean, too: they groom it.

photo by Boogies with Fish

Related: Leafhopper Feeding a Gecko - Cool Crow Research - Dolphin Rescues Beached Whales - Orcas Create Wave to Push Seal Off Ice

April 6, 2008
March 29, 2008

Appetite for Destruction

photo of Mountain Pine Beetle

Appetite for Destruction (link broken, so I removed it) by Eric R. Olson:

“Once the beetles are at the level they’re at in British Columbia, there’s nothing you can do - it’s like a rapidly spreading fire,” says Barbara Bentz, research entomologist with the U.S. Department of Agriculture Forest Service. If the beetle continues to devour trees at the current rate, 80 percent of British Columbia’s mature pines will be killed off by 2013, according to Natural Resources Canada, an arm of the Canadian government.

Global climate change, which is pushing temperatures higher, has altered the beetle’s natural life cycle. Now the insect threatens one of the world’s largest forest systems: Canada’s boreal forest, a 600-mile-wide band of pine woodlands that stretches from the Yukon in Alaska all the way to Newfoundland on the East Coast.

The source of all this destruction is an insect not much bigger than a grain of rice. A native of North America, the pine beetle does its damage by burrowing beneath the bark and feeding on the living tissue of the tree called the phloem. This tissue is composed of long tubes that transport nutrients from root to limb, and once it is destroyed, the tree can no longer survive.

In the past, cold snaps — quick drops in temperature in the spring and fall — have kept beetle populations in check. Although the insects can survive temperatures as low as minus 35 degrees Fahrenheit in the winter, it takes time for their bodies to accumulate enough glycol, the same ingredient found in antifreeze, to survive such frigid temperatures.

Photo: Mountain Pine Beetle (Dendroctonus Ponderosae) under a scanning electron microscope. [Credit: Leslie Manning/Canadian Forest Service]

Related: Rain Forests - Deforestation and Global Warming - Bed Bugs, Science and the Media

March 19, 2008

Baby Sand Dollars Clone Themselves When They Sense Danger

Baby sand dollars clone themselves when they sense danger

The odds of growing up aren’t good for baby sand dollars. Smaller than the head of a pin, the larvae drift in the ocean — easy prey for anything with a mouth.

But a University of Washington graduate student has discovered the tiny animal has a surprising survival strategy: Faced with the threat of being gobbled up, it makes like Dr. Evil from the Austin Powers movies and clones itself. The resulting “mini-me” may escape hungry fish because it is even teenier than the original — and harder to see.

“If you are eaten, but the smaller version of you survives, you’re still a winner from an evolutionary standpoint,” said Dawn Vaughn.

Familiar inhabitants of Washington’s subtidal zone, sand dollars start life though the chance encounter of sperm and egg, simultaneously released into the water by mature adults. The larvae free-float for about six weeks before metamorphosing into miniature sand dollars that settle in colonies and eventually grow to full size.

The white shells that wash up on the beach are the creatures’ external skeletons. Living sand dollars are covered with velvety, purple spines used to grab food particles. Vaughn knew many other marine invertebrates shift their shape to avoid being eaten. Colonial animals called bryozoans grow spikes when voracious sea slugs crawl across them. Barnacles take on a bent posture to repel snails. Vaughn’s own previous research showed periwinkle larvae narrow their shell openings to keep out marauding crab larvae.

March 13, 2008

Secret Life of Microbes

New Window Opens on the Secret Life of Microbes: Scientists Develop First Microbial Profiles of Ecosystems

Nowhere is the principle of “strength in numbers” more apparent than in the collective power of microbes: despite their simplicity, these one-cell organisms–which number about 5 million trillion trillion strong (no, that is not a typo) on Earth–affect virtually every ecological process, from the decay of organic material to the production of oxygen.

But even though microbes essentially rule the Earth, scientists have never before been able to conduct comprehensive studies of microbes and their interactions with one another in their natural habitats.

Because microbes are an ecosystem’s first-responders, by monitoring changes in an ecosystem’s microbial capabilities, scientists can detect ecological responses to stresses earlier than would otherwise be possible–even before such responses might be visibly apparent in plants or animals, Rohwer said.

Evidence that viruses–which are known to be ten times more abundant than even microbes–serve as gene banks for ecosystems. This evidence includes observations that viruses in the nine ecosystems carried large loads of DNA without using such DNA themselves. Rohwer believes that the viruses probably transfer such excess DNA to bacteria during infections, and thereby pass on “new genetic tricks” to their microbial hosts. The study also indicates that by transporting the DNA to new locations, viruses may serve as important agents in the evolution of microbes.

Related: Archaea, Bacteria, Fungi, Protista and Viruses - Microbe Food - Bacterium Living with High Level Radiation

Grand Flood

Grand Canyon photo by John Hunter

Model analysis helps protect river’s ecosystem

The goal of the high-flow experiment, the third since 1996, is to see if such high flows can help reconstruct some of the canyon’s beaches and sand bars that are instrumental to ecological systems and native fishes that have suffered since the building of the Glen Canyon Dam in 1963.

By allowing flow of water that, at its peak, will be more than three times its normal rate (to a volume of 41,500 cubic feet per second), researchers hope to flush some of the dam system of its backed-up sediment and reconstruct habitat downstream. It is expected that the high water-flows will rebuild eroded beaches downstream of the dam by moving sand accumulated in the riverbed onto sandbars.

That in turn will allow the re-establishment of eddy sandbars that provide the slow moving, backwater channels vital for native fish species. The sand bars also provide camping areas for river runners and hikers, and the beaches provide sand to the canyon that helps preserve archaeological resources.

Related: Grand Canyon photos by John Hunter - How to Date the Grand Canyon - Surfing a Wave for 12 km - Megaflood Created the English Channel

March 10, 2008

Deep-Sea Denizen Inspires New Polymers

Deep-Sea Denizen Inspires New Polymers

Stealing a trick from a tiny, pickle-shaped creature that dwells in the depths of the ocean, scientists have designed a new polymer that, when exposed to water, can instantly change its rigidity and strength.

Christoph Weder, an associate professor in the same department at Case, says he and Rowan thought of copying the sea cucumber’s adaptation more than five years ago. Working with marine biologists, they determined that the deep-sea animal accomplished its transformation thanks to fibers made of a protein known as collagen. The tightness of the connections between those fibers determines how stiff the cucumber’s skin is, and is controlled by the animal’s nervous system.

To get their polymer to do the same thing, the Case scientists used fibers found in another deep sea dweller, sea squirts, and also in cotton. When they mixed those fibers - known as cellulose nanofibers - with the rubbery polymer ethylene oxide–epichlorohydrin, they formed a stiff network, “almost glued to each other,” says Weder. Due to the nature of the bonds between the polymer and the fibers, however, water gets between the two substances, weakening the fibers’ adhesion. The material then becomes soft.

Related: 100 Innovations for 2006 - Reusable Paper - High-efficiency Power Supplies

March 9, 2008
February 21, 2008

Leafhopper Feeding a Gecko

Some of this stuff is just fun. The leafhopper feeds on the sap of the tree. And the Gecko will stop by and wait to be fed. The narrator explains that scientists have not determined why this happens, perhaps the Gecko keeps aware predators? That seems somewhat flimsy as a guess to me but what do I know. The narrator does say that the sweet honeydew is what remains from the sap once the leafhopper has extracted the protein.

Related: Macavity’s a Mystery Cat - Swimming Ants

January 17, 2008

Parasite Rex

Parasite Rex is a great book by Carl Zimmer (one of the bloggers listed in the Curious Cat directory of science blogs). This is the first book read as part of my specific plan to read more about bacteria, cells, virus, genes and the like.

One of the most enjoyable aspects of writing this blog is that I have focused much more on cool things I read. And over time the amazing things I posted about related to these topics made me realize I should put some focused effort to reading more on these topics. Some of the posts that sparked that idea: Tracking the Ecosystem Within Us - Inner Life of a Cell: Full Version - Where Bacteria Get Their Genes, People Have More Bacterial Cells than Human Cells, Biological Molecular Motors - Energy Efficiency of Digestion - Old Viruses Resurrected Through DNA - Midichloria mitochondrii - Microbes - Using Bacteria to Carry Nanoparticles Into Cells - How Bacteria Nearly Destroyed All Life - New Understanding of Human DNA - Soil Could Shed Light on Antibiotic Resistance - Symbiotic relationship between ants and bacteria

Parasite Rex was a great place to start. Carl Zimmer is a great writer, and the details on how many parasites there are and how interconnected those parasites are to living systems and how that has affected, and is affecting, us is amazing. And the next book I am reading is also fantastic: Good Germs, Bad Germs. Here is one small example from Parasite Rex, page 196-7:

A person who dies of sickle cell anemia is less likely to pass on the defective gene, and that means the disease should be exceedingly rare. But it’s not - one in four hundred American blacks has sickle sell anemia, and one in ten carries a single copy of the defective gene. The only reason the gene stays in such high circulation is that is also happens to be a defense against malaria.

Malaria is a parasite. One of the amazing things with repeated examples in the book were parasites that seemed to have extremely complicated life cycles (that don’t seem like a great strategy to prosper but obviously work). Where they grow in one life form (an insect or mammal or whatever) but must leave that life form for some other specific life form for the next stage in life (they cannot have descendants without doing so…). Seems like a crazy way to evolve but it happens over and over again.
(more…)

January 11, 2008

Understanding the Evolution of Human Beings by Country

graphic showing countries understanding of evolution I recently wrote about evolution and scientific literacy. The graph on the left shows the percentage of the population that understands evolution is a core scientific principle. The graph based on data from 2005 for 34 countries.

Blue indicates those that know that “human beings, as we know them, developed from earlier species of animals.”
Yellow are those that are unsure
Red are those that don’t know that it is true

Evolution Less Accepted in U.S. Than Other Western Countries, Study Finds, from National Geographic News:

A study of several such surveys taken since 1985 has found that the United States ranks next to last in acceptance of evolution theory among nations polled. Researchers point out that the number of Americans who are uncertain about the theory’s validity has increased over the past 20 years.

The United States is is second to last place in this question of scientific literacy with only 40% of the population knowing the truth. The USA was between Cyprus and Turkey in this measure of understanding of scientific knowledge. The most knowledgeable countries have about twice the rate of knowledgeable respondents (with nearly 80% knowing).

Related: Scientific Illiteracy by Country (the USA managed to stay in the top 10 for overall scientific literacy rate of 8th graders in 2003) - Understanding Evolution (University of California at Berkeley) - Scientifically Illiteracy - Retroviruses - DNA Repair Army - Massive Project Will Reveal How Humans Continue to Evolve - Gene Study Finds Cannibal Pattern - Nigersaurus - Rare Chinese Mountain Cat

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