Posts about Canada

Epigenetic Effects on DNA from Living Conditions in Childhood Persist Well Into Middle Age

Family living conditions in childhood are associated with significant effects in DNA that persist well into middle age, according to new research by Canadian and British scientists.

The team, based at McGill University in Montreal, University of British Columbia in Vancouver and the UCL Institute of Child Health in London looked for gene methylation associated with social and economic factors in early life. They found clear differences in gene methylation between those brought up in families with very high and very low standards of living. More than twice as many methylation differences were associated with the combined effect of the wealth, housing conditions and occupation of parents (that is, early upbringing) than were associated with the current socio-economic circumstances in adulthood. (1252 differences as opposed to 545).

I find Epigenetics to be a very interesting area. My basic understanding as I grew up was that you inherited your genes. But epigenetics explores how your genes change over time. This has been a very active area of research recently. Your DNA remains the same during your life. But the way those genes are expressed changes.

I don’t know of any research supporting the idea I mention in this example, but, to explain the concept in a simple way: you may carry genes in your DNA for processing food in different ways. If you have very limited diet the way your body reacts could be to express genes that specialize in maximizing the acquisition of nutrition from food. And it could be that your body sets these expressions based on your conditions when young; if later, your diet changes you may have set those genes to be expressed in a certain way. Again this is an example to try and explain the concept, not something where I know of research that supports evidence for this example.

The findings by these universities, were unfortunately published in a closed way. Universities should not support the closing of scientific knowledge. Several universities, that support open science, require open publication of scientific research. It is unfortunate some universities continue to support closed science.

The research could provide major evidence as to why the health disadvantages known to be associated with low socio-economic position can remain for life, despite later improvement in living conditions. The study set out to explore the way early life conditions might become ‘biologically-embedded’ and so continue to influence health, for better or worse, throughout life. The scientists decided to look at DNA methylation, a so-called epigenetic modification that is linked to enduring changes in gene activity and hence potential health risks. (Broadly, methylation of a gene at a significant point in the DNA reduces the activity of the gene.)

Related: DNA Passed to Descendants Changed by Your LifeBlack Raspberries Alter Hundreds of Genes Slowing CancerBreastfeeding Linked to More Intelligent Kids

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Cambrian Explosion Song

via Smithsonian’s Surprising Science:

What does a music teacher do when he ends up teaching science? He teaches about evolution and the geologic timeline with music, of course, and that’s what Canadian elementary school teacher John Palmer did. He originally played “Cambrian Explosion” as a rock/hip hop creation in class but has since recorded an acoustic version. (The trio is called Brighter Lights, Thicker Glasses and consists of Palmer on the guitar/vocals, Michael Dunn on the dobro and Brian Samuels [from UBC civil engineering department] on the cello.)

The video was filmed in the Beaty Biodiversity Museum (Canada) atrium with the blue whale exhibit in the background.

Related: Test it Out, Experiment by They Might Be GiantsHere Comes Science by They Might Be GiantsLobopodians from China a Few Million Years AgoGoogle Art Project: View Art from the Hermitage, the Met, etc.

Top Countries for Science and Math Education: Finland, Hong Kong and Korea

The 2009 Programme for International Student Assessment (PISA) report has been released. The report examines the science of 15 year olds from 57 countries in math, science and reading. The main focus of PISA 2009 was reading. the survey also updated performance assessments in mathematics and science. The emphasis is on mastering processes, understanding concepts and functioning in various contexts within each assessment area. the PISA 2012 survey will return to mathematics as the major assessment area, PISA 2015 will focus on science.

Results for the Science portion (rank – country – mean score)(I am not listing all countries):

  • 1 – Finland – 554
  • 2 – Hong Kong – 549
  • 3 – Japan – 539
  • 4 – Korea – 538
  • 5 – New Zealand – 532
  • 6 – Canada – 529
  • 7 – Estonia – 528
  • 8 – Australia – 527
  • 9 – Netherlands – 522
  • 10 – Taiwan – 520
  • 11 – Germany – 520
  • 14 – United Kingdom – 514
  • 21 – USA – 502 (up from 489 and 29th place in 2006)
  • OECD average – 501
  • 25 – France – 498
  • 46 – Mexico – 416
  • 49 – Brazil – 405

Results for the math portion (rank – country – mean score)(I am not listing all countries):
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NHL Experiments with the Rules of Hockey

The NHL’s ice-capades

The players—who were, in an attention-getting wrinkle, mostly top junior stars eligible for the 2011 draft—road-tested everything from two-on-two overtime to shallower nets to having the second referee view the play from an elevated off-ice platform. On day two, viewers were confronted with the bizarre spectacle of the traditional five faceoff circles being replaced by three, running up the middle of the rink.

Placed in charge of the R & D effort, and the sales job surrounding it, is retired hockey great Brendan Shanahan, now the league’s vice-president of hockey and business development. “There were some ideas that were adventurous and others that were subtle,” says Shanahan, about the recent camp. “I wanted to capture the full spectrum.” Shanahan, who had the final say on the testing schedule, takes the scientist’s view that a “negative” experimental result can be as useful and instructive as a “positive” one. “Sometimes you just have to see things play out to really satisfy your curiosity,” he says. “What I told people that got sort of frightened at some of our far-out ideas is that sometimes your goal is to breathe life into an idea—but other times, you try it out because it’s time to put it to bed.”

I applaud their willingness to try experiments. I am a sports fan who doesn’t find much interest in the NHL, but I do enjoy Olympic hockey.

Related: Teen Goalie Designs Camouflage PadsEngineering a Better FootballRandomization in SportsBaseball Pitch Designed in the Lab

Canadian Oil Sands

Canadian oil sands sitePhotograph by Peter Essick, National Geographic

Canadian Oil Boom

To extract each barrel of oil from a surface mine, the industry must first cut down the forest, then remove an average of two tons of peat and dirt that lie above the oil sands layer, then two tons of the sand itself. It must heat several barrels of water to strip the bitumen from the sand and upgrade it, and afterward it discharges contaminated water into tailings ponds like the one near Mildred Lake. They now cover around 50 square miles.

The Alberta government estimates that the province’s three main oil sands deposits, of which the Athabasca one is the largest, contain 173 billion barrels of oil that are economically recoverable today. “The size of that, on the world stage—it’s massive,” says Rick George, CEO of Suncor, which opened the first mine on the Athabasca River in 1967. In 2003, when the Oil & Gas Journal added the Alberta oil sands to its list of proven reserves, it immediately propelled Canada to second place, behind Saudi Arabia, among oil-producing nations. The proven reserves in the oil sands are eight times those of the entire U.S. “And that number will do nothing but go up,” says George. The Alberta Energy Resources and Conservation Board estimates that more than 300 billion barrels may one day be recoverable from the oil sands; it puts the total size of the deposit at 1.7 trillion barrels.

But the free market does not consider the effects of the mines on the river or the forest, or on the people who live there, unless it is forced to. Nor, left to itself, will it consider the effects of the oil sands on climate. Jim Boucher has collaborated with the oil sands industry in order to build a new economy for his people, to replace the one they lost, to provide a new future for kids who no longer hunt ptarmigan in the moonlight. But he is aware of the trade-offs. “It’s a struggle to balance the needs of today and tomorrow when you look at the environment we’re going to live in,” he says. In northern Alberta the question of how to strike that balance has been left to the free market, and its answer has been to forget about tomorrow. Tomorrow is not its job.

This is a good article by National Geographic. We need energy. We also need to protect the environment. The trade-offs societies decide to make are often not easy. But open discussion of the issues is important.

Related: Wind Power Provided Over 1% of Global Electricity in 200759 MPG Toyota iQ DieselSolar Thermal in Desert, to Beat Coal by 2020Bigger Impact: 15 to 18 mpg or 50 to 100 mpg?

Canada Film Board Provides Open Access

The National Film Board of Canada is marking its 70th anniversary in 2009 with a gift to Canadians and Web users: a new online Screening Room providing free home viewing of over 700 productions, films, trailers and clips from the NFB’s world-renowned collection.

“This new online Screening Room is the latest example of how the NFB plays a major role in the free exchange of ideas through cinema,” said Tom Perlmutter, Government Film Commissioner and Chairperson of the National Film Board of Canada. “At a time when issues are inter-connected and global communications are mobile and instantaneous, Canada needs a voice. More than ever, the NFB provides that voice: empowering Canadians to share their concerns, express their points of view, tell Canada’s stories. The world is changing – our stories continue.”

From historical films dating back to 1928 to current contemporary releases, including award-winning documentaries, animation and fiction, this initiative invites Canadians from all regions, to browse, discover and be entertained by the stories that bind us together.

The NFB has also opened its vaults to bring forgotten gems to light: archival works that offer rare glimpses back into our past, from Canada’s sacrifices during World War II to traditional communities, exploring the changing face of Canada over the decades.

The site includes many science and nature films including: Life on IceKluane National ParkIn Search of the Bowhead WhaleThe Enduring Wilderness (Canada’s Natural Parks)

The National Film Board of Canada showing far more vision than many others clinging to outdated models. The internet provides a great opportunity for sharing and using open access to share ideas.

Related: Meteorite, Older than the Sun, Found in CanadaFishy Future?Arctic System on Trajectory to New, Seasonally Ice-Free State

Canadian Meteorite Fragments Found

University of Calgary graduate student Ellen Milley poses with a fragment of a meteorite

Pictures of Canadian Meteorite Fragments

Planetary scientist Dr. Alan Hildebrand from the University of Calgary and graduate student Ellen Milley brought reporters to a site where they have found numerous meteorite fragments from the bolide that streaked across the sky in Western Canada

The fireball that streaked across western Canadian skies was witnessed by thousands, and Hildebrand believes it was a 10-ton fragment from an asteroid. Videos from surveillance and police cameras [see below] showed the meteor exploding before it hit the ground

Photo: University of Calgary graduate student Ellen Milley poses with a fragment of a meteorite in a small pond. By Geoff Howe, The Canadian Press.

Related: U of C team finds meteor fragmentsMeteorite, Older than the Sun, Found in Canada (this is a different meteorite – story from 2007) – In Tunguska, Siberia 99 Years AgoMeteorite Lands in New Jersey Bathroom
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High School Student Isolates Microbe that Eats Plastic

WCI student isolates microbe that lunches on plastic bags

Daniel Burd’s project won the top prize at the Canada-Wide Science Fair in Ottawa. He came back with a long list of awards, including a $10,000 prize, a $20,000 scholarship, and recognition that he has found a practical way to help the environment.

First, he ground plastic bags into a powder. Next, he used ordinary household chemicals, yeast and tap water to create a solution that would encourage microbe growth. To that, he added the plastic powder and dirt. Then the solution sat in a shaker at 30 degrees.

After three months of upping the concentration of plastic-eating microbes, Burd filtered out the remaining plastic powder and put his bacterial culture into three flasks with strips of plastic cut from grocery bags. As a control, he also added plastic to flasks containing boiled and therefore dead bacterial culture.

Six weeks later, he weighed the strips of plastic. The control strips were the same. But the ones that had been in the live bacterial culture weighed an average of 17 per cent less.

The inputs are cheap, maintaining the required temperature takes little energy because microbes produce heat as they work, and the only outputs are water and tiny levels of carbon dioxide — each microbe produces only 0.01 per cent of its own infinitesimal weight in carbon dioxide, said Burd.

“This is a huge, huge step forward . . . We’re using nature to solve a man-made problem.” Burd would like to take his project further and see it be used. He plans to study science at university, but in the meantime he’s busy with things such as student council, sports and music.

Related: Bacteria Survive On All Antibiotic DietMicrobes May Use Chemicals to Compete for FoodSiemens Westinghouse Competition Winners 2005

Seeking Solar Supremacy

The dance of the particles

Engineering professors Ray LaPierre, who is working with Cleanfield on solar cells made from a dense turf of nanowires, and Adrian Kitai, who co-founded Flexible Solar to make bendable solar panels that are less costly to manufacture, are showing how skills typically prized in the telecom sector can be repurposed to build better solar technologies.

Similar efforts are also being made at the University of Toronto’s Institute for Optical Sciences, where a new spin-off called The Solar Venture aims to improve the economics of solar. “Ontario was a global leader in telecom, but now that has slowed down,” says Rafael Kleiman, professor of engineering physics and director of McMaster’s Centre for Emerging Device Technologies. “All the people, all this research (in telecom), is finding a new home. I really believe Ontario can make itself a global hub in solar photovoltaic technologies.”

A solar cell is just a big specialized chip, so everything we’ve learned about making chips applies,” Paul Saffo, an engineering professor at Stanford University, recently told the New York Times. There’s a reason why California’s Silicon Valley, the headquarters of data-networking king Cisco Systems and semiconductor goliath Intel, is positioning itself as Solar Valley.

All around the world people are aiming to create centers of excellence for solar power research and production.

Related: Economic Strength Through Technology LeadershipLarge-Scale, Cheap Solar ElectricityEconomic Impact of Educational InstitutionsSolar Power InnovationNanotechnology Supports National Economic PolicyEntrepreneurial Engineers

Funding Medical Research

Cheap, ‘safe’ drug kills most cancers

It sounds almost too good to be true: a cheap and simple drug that kills almost all cancers by switching off their “immortality”. The drug, dichloroacetate (DCA), has already been used for years to treat rare metabolic disorders and so is known to be relatively safe. It also has no patent, meaning it could be manufactured for a fraction of the cost of newly developed drugs.

Evangelos Michelakis of the University of Alberta in Edmonton, Canada, and his colleagues tested DCA on human cells cultured outside the body and found that it killed lung, breast and brain cancer cells, but not healthy cells. Tumours in rats deliberately infected with human cancer also shrank drastically when they were fed DCA-laced water for several weeks.

DCA attacks a unique feature of cancer cells: the fact that they make their energy throughout the main body of the cell, rather than in distinct organelles called mitochondria. This process, called glycolysis, is inefficient and uses up vast amounts of sugar.

Until now it had been assumed that cancer cells used glycolysis because their mitochondria were irreparably damaged. However, Michelakis’s experiments prove this is not the case, because DCA reawakened the mitochondria in cancer cells. The cells then withered and died

The University of Alberta is raising funds to further the research. Some look at this and indite a funding system that does not support research for human health unless there is profit to be made. Much of the blame seems to go to profit focused drug companies. I can see room for some criticism. But really I think the criticism is misplaced.

The organizations for which curing cancer is the partial aim (rather than making money) say government (partial aim or public health…), public universities (partial aim of science research or medical research…), foundations, cancer societies, private universities… should fund such efforts, if they have merit. Universities have huge research budgets. Unfortunately many see profit as their objective and research as the means to the objective (based on their actions not their claims). These entities with supposedly noble purposes are the entities I blame most, not profit focused companies (though yes, if they claim an aim of health care they I would blame them too).

Now I don’t know what category this particular research falls into. Extremely promising or a decent risk that might work just like hundreds or thousands of other possibilities. But lets look at several possibilities. Some others thoughts on where it falls: Dichloroacetate to enter clinical trials in cancer patients, from a previous post here – Not a Cancer Cure Yet, The dichloroacetate (DCA) cancer kerfuffle, CBC’s ‘The Current’ on dichloroacetate (DCA), Dichloroacetate (DCA) Phase II Trial To Begin (“Like hundreds (if not, thousands) of compounds being tested to treat cancer, DCA was shown by Michelakis’ group earlier this year to slow the growth of human lung tumors in a preclinical rodent model.”).
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Ranking Universities Worldwide

The Webometrics Ranking of World Universities provides another estimate of the top universities. The methodology is far ideal however I still find it interesting. The various attempts to rank schools can provide a general idea of impact of various institutions (though the measures are fairly crude). Still a sensible picture (especially at the country level) can emerge. And the various rankings should be a able to track shifts in the most influential institutions and relative country strength over time. How quickly those rankings track changes will vary depending on the measures used. I would imagine most will lag the “real” changes as it is easy to imagine many measures that would lag. Still, as I have said before, I expect the USA will lose in relative ranking compared to China, India, Japan, Singapore, Mexico…

The ranking methodology used here weighed rankings in: Jiao Tong academic rankings, Essential Science Indicators, Google Scholar, Alexa (a measure of web site visits to universities) and The Times Higher World University Rankings.

Country representation of the top universities (number of top schools in each country):

location Webometrics
Top 100
Jiao Tong
Top 101
% of World
Population
% of World GDP*
USA 53 54   4.6%   30.4%
Germany 10   5  1.3   6.3
Canada   8   4  0.5   2.5
United Kingdom   6 10  0.9   5.0
Australia   3   2  0.3   1.6
Japan   1   6 2.0 10.3
The rest of Europe 16 13
Brazil   1   0   2.8   1.8
Mexico   1   0   1.6   1.7
Israel   0   1   0.1   0.3

* IMF, World Economic Outlook Database, September 2006 (2005 data)
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