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May 5, 2008

Fat Cell Count Set in Childhood

Fat cell number is set in childhood and stays constant in adulthood

As fat people have an abundance of fat tissue, the natural assumption is that fat people have more fat cells, or ‘adipocytes’. That’s only part of the story - it turns out that overweight and obese people not only have a surplus of fat cells, they have larger ones too.

During adulthood, about 8% of fat cells die every year only to be replaced by new ones. As a result, adults have a constant number of fat cells, even those who lose masses of weight. Instead, it’s changes in the volume of fat cells that causes body weight to rise and fall.

we couldn’t have a clearer indication of the importance of childhood as a window for preventing obesity and the chronic diseases affected by it - cancer, heart disease, diabetes and more.

The message is especially stark following the recent Foresight report, which estimated that if current trends are left unchecked, by 2050 a quarter of all UK children under the age of 16 will be obese. The knowledge that their fat cell count will then be set for life makes the cost of inaction even higher. Fortunately, it seems that the UK Government is taking appropriate steps and recently pledged over a third of a billion pounds on a concerted strategy to tackle childhood obesity.

Related: $500 Million to Reduce Childhood Obesity in USA - Obesity Epidemic Explained - Kind Of - Drinking Soda and Obesity

May 3, 2008

Colony Collapse Disorder Continues

1.1 Million Bee Colonies Dead This Year

The information provided here was generated by a survey conducted by the Apiary Inspectors of America. They took the survey in January and February this year, and in the process, gathered information from 18% of the colonies in the U.S.

The survey found that about 35% of all the colonies in the U.S. died last winter. Of those that died, 71% died of natural causes, 29% from symptoms that are suspect colony collapse disorder. Doing the math that comes to at least 10% of all the bees in the U.S. last year died of Colony Collapse Disorder.

Considering all these factors, undue concern over IAPV detection is not warranted. While IAPV’s role in colony losses remains a priority in ongoing research, we do know that high levels of other common bee viruses, such as KBV, DWV, and ABPV, have also been linked with certain incidences of high colony mortality or decline in worker numbers. We also know that nearly all bee colonies are infected with at least one type of virus and that all these viruses are potentially pathogenic.

The research continues. As I have said before this is a great example of scientists in action trying to figure out what is happening.

Related: The Study of Bee Colony Collapses Continues - Bye Bye Bees - Scientists Search for Clues To Bee Mystery

April 29, 2008

Autism, Science and Politics

Clinton and Obama parrot the “vaccine and autism connection inconclusive” line by Tara C. Smith:

Ugh. At least they don’t say there’s “strong evidence” to support it like McCain. I can certainly get behind more research on environmental factors in autism development (and of course, additional funding for biomedical research, period), but we’ve been there/done that for vaccines. I wonder if either of them are even aware of The National Children’s Health Study?

The National Children’s Study will examine the effects of environmental influences on the health and development of more than 100,000 children across the United States, following them from before birth until age 21. The goal of the study is to improve the health and well-being of children.

Variables examined will include vaccinations received, and development of autism will be one of the outcomes examined. What more can you ask for? Obama and Clinton’s claims of ignorance on the part of the scientific community when it comes to vaccines and autism show that we don’t have any real science defenders in the running.

Related: Scientists and Engineers in Congress - Science and Engineering in Politics - The A to Z Guide to Political Interference in Science

April 27, 2008

Wheat Rust Research

By increasing the production of wheat it is said Norman Borlaug has saved more lives than anyone else who ever lived, for which he was awarded the 1970 Nobel Peace Prize. See his New York Times opinion piece: Stem Rust Never Sleeps

Today, wheat provides about 20 percent of the food calories for the world’s people. The world wheat harvest now stands at about 600 million metric tons.

In the last decade, global wheat production has not kept pace with rising population, or the increasing per capita demand for wheat products in newly industrializing countries. At the same time, international support for wheat research has declined significantly. And as a consequence, in 2007-08, world wheat stocks (as a percentage of demand) dropped to their lowest level since 1947-48. And prices have steadily climbed to the highest level in 25 years.

The new strains of stem rust, called Ug99 because they were discovered in Uganda in 1999, are much more dangerous than those that, 50 years ago, destroyed as much as 20 percent of the American wheat crop. Today’s lush, high-yielding wheat fields on vast irrigated tracts are ideal environments for the fungus to multiply, so the potential for crop loss is greater than ever.

If publicly financed international researchers move together aggressively and systematically, high-yielding replacement wheat varieties can be developed and made available to farmers before stem rust disease becomes a global epidemic.

The Bush administration was initially quick to grasp Ug99’s threat to American wheat production. In 2005, Mike Johanns, then secretary of agriculture, instructed the federal agriculture research service to take the lead in developing an international strategy to deal with stem rust. In 2006, the Agency for International Development mobilized emergency financing to help African and Asian countries accelerate needed wheat research.

But more recently, the administration has begun reversing direction. The State Department is recommending ending American support for the international agricultural research centers that helped start the Green Revolution, including all money for wheat research. And significant financial cuts have been proposed for important research centers, including the Department of Agriculture’s essential rust research laboratory in St. Paul.

This shocking short-sightedness goes against the interests not only of American wheat farmers and consumers but of all humanity. It is tantamount to the United States abandoning its pledge to help halve world hunger by 2015.

Related: Diplomacy and Science Research - Five Scientists Who Made the Modern World - 2004 Medal of Science Winners - U.S. Slipping on Science

April 24, 2008

Amazon Molly Fish are All Female

No sex for all-girl fish species

A fish species, which is all female, has survived for 70,000 years without reproducing sexually, experts believe.

The species, found in Texas and Mexico, interacts with males of other species to trigger its reproduction process. The offspring are clones of their mother and do not inherit any of the male’s DNA. Typically, when creatures reproduce asexually, harmful changes creep into their genes over many generations.

One theory is that the fish may occasionally be taking some of the DNA from the males that trigger reproduction, in order to refresh their gene pool.

Dr Laurence Loewe, of the university’s School of Biological Sciences, said: “What we have shown now is that this fish really has something special going on and that some special tricks exist to help this fish survive. “Maybe there is still occasional sex with strangers that keeps the species alive. Future research may give us some answers.”

He added that their findings could also help them understand more about how other creatures operate. “I think one of the interesting things is that we are learning more about how other species might use these tricks as well,” he said. “It might have a more general importance.”

Related: Female Sharks Can Reproduce Alone - Only Dad’s Genes - Bdelloid Rotifers Abandoned Sex 100 Million Years Ago - Sex and the Seahorse - more posts about fish

April 23, 2008

$60 Million for Science Teaching at Liberal Arts Colleges

HHMI Awards $60 Million to Invigorate Science Teaching at Liberal Arts Colleges

A year ago, the Howard Hughes Medical Institute issued a challenge to 224 undergraduate colleges nationwide: identify creative new ways to engage your students in the biological sciences.

Now 48 of the nation’s best undergraduate institutions will receive $60 million to help them usher in a new era of science education. This includes the largest number of new grantees in more than a decade; more than a quarter have never received an HHMI grant before.

Colleges in 21 states and Puerto Rico will receive $700,000 to $1.6 million over the next four years to revitalize their life sciences undergraduate instruction. HHMI has challenged colleges to create more engaging science classes, bring real-world research experiences to students, and increase the diversity of students who study science.

Creating interdisciplinary science classes and incorporating more mathematics into the biology curriculum were among the major themes proposed by the schools. Many schools will also allow more students to experience research through classroom-based courses and summer laboratory programs.

HHMI is the nation’s largest private supporter of science education. It has invested more than $1.2 billion in grants to reinvigorate life science education at both research universities and liberal arts colleges and to engage the nation’s leading scientists in teaching. In 2007, it launched the Science Education Alliance, which will serve as a national resource for the development and distribution of innovative science education materials and methods.

Related: $60 Million in Grants for Universities (2007) - Genomics Course For College Freshman Supported by HHMI at 12 Universities - $600 Million for Basic Biomedical Research - Funding Medical Research - posts on science and engineering funding

April 21, 2008

Viruses Eating Bacteria

All the World’s a Phage by John Travis:

“Believe it or not, nobody had looked before,” says Suttle. “On average, there are 50 million viruses per milliliter in seawater. The question is, What the heck they’re doing there?” Microbiologists then documented similar, and even higher, concentrations of phages in soil samples. This led to estimates of 1031 bacteriophages worldwide, a staggeringly large number that many scientists initially dismissed. “We can’t wrap our brains around it,” says Pedulla. “If phages were the size of a beetle, they would cover the Earth and be many miles deep.”

According to estimates put forth by Suttle, phages destroy up to 40 percent of the bacteria in Earth’s oceans each day.

The students collected soil from barnyards, gardens, and even the monkey pit at the Bronx Zoo. The scientists then taught the students how to isolate a bacteriophage from the soil by growing the viruses in Mycobacterium smegmatis, a harmless bacterial relative of the microbe that causes tuberculosis. “We guarantee them that the bacteriophage they find will never have been discovered before. We know that because the diversity is so high, and we’ve never isolated the same bacteriophage twice,” says Hatfull.

In the April 18 Cell, Hatfull and his professional and teenage collaborators describe the genomes of 10 soil-dwelling bacteriophages that they had isolated. Of the more than 1,600 genes that the team identified, about half are novel, that is, they don’t match any previously described genes in any other organism.

Science is full of amazing new frontiers. Some other amazing stuff: Thinking Slime Moulds - Tracking the Ecosystem Within Us - Retroviruses - Energy Efficiency of Digestion - One Species’ DNA Discovered Inside Another’s

April 19, 2008

Wabash Valley, Illinois Earthquakes

USGS on the recent earthquakes occurred in the Wabash Valley Seismic

These earthquakes occurred in the Wabash Valley Seismic zone. The earthquakes in this zone are scattered over a large area of southeastern Illinois and southwest Indiana. The zone had at least eight prehistoric earthquakes over the past 20,000 years with estimated magnitudes ranging from about 6.5 to 7.5, based on geologic evidence. Earthquakes of the size of the recent quake (Mw 5.2) can produce smaller aftershocks over the following days. A few might be large enough to be felt. Typically, earthquakes of this size (Mw 5.2) can cause light damage within a few tens of miles from the epicenter. Central and eastern US earthquakes generally shake areas about 10 times as large as those that occur in California. It is not surprising that this earthquake was felt as far south as Florida.

The Wabash Valley Seismic zone is adjacent to the more seismically active New Madrid seismic zone on the seismic zone’s north and west. The recent earthquake is also within the Illinois basin - Ozark dome region that covers parts of Indiana, Kentucky, Illinois, Missouri, and Arkansas and stretches from Indianapolis and St. Louis to Memphis. Moderately frequent earthquakes occur at irregular intervals throughout the region. The largest historical earthquake in the Illinois Basin region (magnitude 5.4) damaged southern Illinois in 1968. Moderately damaging earthquakes strike somewhere in the region each decade or two, and smaller earthquakes are felt about once or twice a year.

Earthquakes in the central and eastern U.S., although less frequent than in the western U.S., are typically felt over a much broader region. East of the Rockies, an earthquake can be felt over an area as much as ten times larger than a similar magnitude earthquake on the west coast.

Related: Interview with Seismologist, Harley Benz, USGS Golden, Colorado - Quake Lifts Island Ten Feet Out of Ocean - Australian Coal Mining Caused Earthquakes - Himalayas Geology

April 18, 2008

Medical Study Integrity (or Lack Thereof)

Merck wrote drug studies for doctors

The drug maker Merck drafted dozens of research studies for a best-selling drug, then lined up prestigious doctors to put their names on the reports before publication, according to an article to be published Wednesday in a leading medical journal.

The article, based on documents unearthed in lawsuits over the pain drug Vioxx, provides a rare, detailed look in the industry practice of ghostwriting medical research studies that are then published in academic journals.

“It almost calls into question all legitimate research that’s been conducted by the pharmaceutical industry with the academic physician,” said Ross, whose article, written with colleagues, was published Wednesday in JAMA, The Journal of the American Medical Association, and posted Tuesday on the journal’s Web site.

Merck acknowledged Tuesday that it sometimes hired outside medical writers to draft research reports before handing them over to the doctors whose names eventually appear on the publication. But the company disputed the article’s conclusion that the authors do little of the actual research or analysis.

It is sad that the integrity of journals and scientists is so weak that they leave them open to such charges. The significant presence of the corrupting influence of too much money leaves doubt in my mind that the best science is the goal. Which is very sad. In, Funding Medical Research, I discussed my concern that universities are acting more like profit motivated organizations than science motivated organizations. I am in favor of profit motivated organization (those getting the micro-financing in this link, for example) but those organization should not be trusted to provide honest and balanced opinions they should be expected to provide biased opinions.

If universities (and scientists branding themselves as … at X university) want to be seen as honest brokers of science they can’t behave as though raising money, getting patents… are their main objectives. Many want to be able to get the money and retain the sense of an organization focused on the pursuit of science above all else. Sorry, you can’t have it both ways. You can, and probably should, try stake out some ground in the middle. And for me right now, partially because they fail to acknowledge the extent to which money seems to drive decisions I don’t believe they are trying to be open and honest, instead I get the impression they are leaning more toward trying to market and sell.
(more…)

April 17, 2008

The Last Lecture Book

image of the cover of The Last Lecture

We wrote about this last August: CMU Professor Gives His Last Lesson on Life. If you haven’t seen the lecture I encourage you to do so now. Now there is a book by Dr. Randy Pausch called The Last Lecture where he expands on his lecture with “many more stories from my life and the attendant lessons I hope my kids can take from them.”

Like any teacher, my students are my biggest professional legacy. I’d like to think that the people I’ve crossed paths with have learned something from me, and I know I learned a great deal from them, for which I am very grateful. Certainly, I’ve dedicated a lot of my teaching to helping young folks realize how they need to be able to work with other people–especially other people who are very different from themselves.

Related: William G. Hunter: An Innovator and Catalyst for Quality Improvement by George Box - Inspirational Engineer - Tour the Carnegie Mellon Robotics Lab - What Kids can Learn - Sarah, aged 3, Learns About Soap - Some more on my father - Science Books

April 16, 2008

Is Computer Science a Science?

Is computer science a science?

Most people seem to apply a certain litmus test of sorts to determine if something is a science. Something is a science if

(1) it uses the scientific method (i.e., empirical research and observation)
(2) it involves studying “fundamental principles” of the natural or physical world

(1) is, I think, a bit easier to address. I use the scientific method all the time in my work: I form hypotheses about how a particular system or algorithm should behave, develop experiments to test the hypothesis, gather data, analyze, etc. Several commenters to the first post in the series discuss the same thing. Joe, for instance, says this about his work: “One of the things I’ve noticed as a developer/engineer for the last 20 years is that I use the techniques of science all the time, only I’m not studying “nature” (be it the physics world, chemicals, biology, or people). I’m applying the disciplines and the scientific process to stuff that other people have done.” (I’ll get back to this point in a minute.)

Related: Computer Science as Science - Computer Science PhD Overview - Who Killed the Software Engineer? - Electrical Engineering vs. Computer Science :-)

April 14, 2008

Bikini Atoll 50 Years Later

Nuked coral reef bounces back

Three islands of Bikini Atoll were vapourised by the Bravo hydrogen bomb in 1954, which shook islands 200 kilometres away. Instead of finding a bare underwater moonscape, ecologists who have dived it have given the 2-kilometre-wide crater a clean bill of health.

“It was fascinating – I’ve never seen corals growing like trees outside of the Marshall Islands,” says Zoe Richards of the ARC Centre of Excellence for Coral Reef Studies in Australia. Richards and colleagues report a thriving ecosystem of 183 species of coral, some of which were 8 metres high. They estimate that the diversity of species represents about 65% of what was present before the atomic tests. The ecologists think the nearby Rongelap Atoll is seeding the Bikini Atoll, and the lack of human disturbance is helping its recovery.

“When I put the Geiger counter near a coconut, which accumulates radioactive material from the soil, it went berserk,” says Beger.

Related: Quake Lifts Island Ten Feet Out of Ocean - Bacterium Living with High Level Radiation - Artic Seed Vault

April 5, 2008

Scientists Witness the Birth of a Brain Cell

The Birth of a Brain Cell: Scientists Witness Neurogenesis

For the first time, researchers have developed a way to view stem cells in the brains of living animals, including humans—a finding that allows scientists to follow the process neurogenesis (the birth of neurons). The discovery comes just months after scientists confirmed that such cells are generated in adult as well as developing brains.

The key ingredient in this process is a substance unique to immature cells that is neither found in mature neurons nor in glia, the brain’s nonneuronal support cells. Maletic-Savatic and her colleagues collected samples of each of the three cell types from rat brains (stem cells from embryonic animals, the others from adults) and cultured the varieties separately in the lab. They were able to determine the chemical makeup of each variety - and isolate the compound unique to stem cells - with nuclear magnetic resonance (NMR) spectroscopy. (NMR helps to determine a molecule’s structure by measuring the magnetic properties of its subatomic particles.) Although the NMR could identify the biomarker, but not its makeup, Maletic-Savatic speculates it is a blend of fatty acids in a lipid (fat) or lipid protein.

Related: Feed your Newborn Neurons - Brain Development - New Neurons in Old Brains - No Sleep, No New Brain Cells

April 4, 2008

Vega Science Lectures: Feynman and More

Vega Science Lectures

Vega is building a collection of classic lectures by eminent scientists, both from its own source material and donations from universities and other independent groups such as the Feynman family.

A set of four priceless archival recordings from the University of Auckland (New Zealand) of the outstanding Nobel prize-winning physicist Richard Feynman - arguably the greatest science lecturer ever. Although the recording is of modest technical quality the exceptional personal style and unique delivery shine through.

Great content. Enjoy.

Related: BBC In Our Time Science Podcasts - directory of science and engineering webcasts - YouTube+ for Science from PLoS - The Best Science Books

April 3, 2008

‘Refrigerator’ Without Electricity

photo of pot in pot

2000 Rolex award to Mohammed Bah Abba of Nigeria for the Pot in Pot Cooling System:

Ingenious technique that requires no external energy supply to preserve fruit, vegetables and other perishables in hot, arid climates. The pot-in-pot cooling system, a kind of “desert refrigerator”, helps subsistence farmers by reducing food spoilage and waste and thus increasing their income and limiting the health hazards of decaying foods. Abba says he developed the pot-in-pot “to help the rural poor in a cost-effective, participatory and sustainable way”.

The pot-in-pot consists of two earthenware pots of different diameters, one placed inside the other. The space between the two pots is filled with wet sand that is kept constantly moist, thereby keeping both pots damp. Fruit, vegetables and other items such as soft drinks are put in the smaller inner pot, which is covered with a damp cloth. The phenomenon that occurs is based on a simple principle of physics: the water contained in the sand between the two pots evaporates towards the outer surface of the larger pot where the drier outside air is circulating. By virtue of the laws of thermodynamics, the evaporation process automatically causes a drop in temperature of several degrees, cooling the inner container, destroying harmful micro-organisms and preserving the perishable foods inside.

He also received the 2001 Shell Award for Sustainable Development. Great stuff:

Born in 1964 into a family of pot makers and raised in the rural north, Mohammed Bah Abba was familiar from an early age with the various practical and symbolic uses of traditional clay pots, and learned as a child the rudiments of pottery. Subsequently studying biology, chemistry and geology at school, he unravelled the technical puzzle that led him years later to develop the “pot-in-pot preservation/cooling system”.

Related: Appropriate Technology (Kick Start) - appropriate technology tagged posts - Smokeless Stove Uses 80% Less Fuel - Water and Electricity for All - The Importance of Science Education - Engineering a Better World

April 2, 2008

Orzel: What Everyone Should Know About Science

What Everyone Should Know About Science by Chad Orzel:

1) Science is a Process, Not a Collection of Facts The essence of science, broadly defined, is that it is a systematic approach to figuring out how the world works:

1. look at the world around you
2. come up with an idea for why it might work that way.
3. test your idea against reality.
4. tell everybody you know the results of the test.

Put those steps together, over and over, and you have the best method ever devised for increasing our store of reliable knowledge. The precise facts found by this method are not as important as the process for finding them– given the process, and enough time, you can reconstruct whatever facts you need. The facts without the process are worse than useless, they’re dangerous.

Related: What Everyone Should Learn - What Makes Scientists Different :-) - Scientists Search for Clues To Bee Mystery - Peru Meteorite Provides Puzzles

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