Leslie Lamport Receives 2013 ACM Turing Award

Posted on November 22, 2014  Comments (0)

Leslie Lamport, a Principal Researcher at Microsoft Research, has been named as the recipient of the 2013 ACM A.M. Turing Award for imposing clear, well-defined coherence on the seemingly chaotic behavior of distributed computing systems, in which several autonomous computers communicate with each other by passing messages. He devised important algorithms and developed formal modeling and verification protocols that improve the quality of real distributed systems. These contributions have resulted in improved correctness, performance, and reliability of computer systems.

ACM (Association for Computing Machinery) announced that the funding level for the ACM Turing Award is now $1,000,000 (to be provided by Google). The new amount is four times its previous level. It seems to me the 14th of November 2014 is a bit late to announce the 2013 award winner, but for an extra $750,000 I would gladly wait a year (or a decade for that matter).

The new award level brings the computer science award to the level of Nobel Prizes and the Fields medal.

Leslie Lamport’s 1978 paper, “Time, Clocks, and the Ordering of Events in a Distributed System,” one of the most cited in the history of computer science.

Read more about the work of Leslie Lamport.

Related: Barbara Liskov wins Turing Award (2009)Donald Knuth, Computer Scientist (2006)Google 2006 Anita Borg Scholarship2008 Draper Prize for Engineering

Biology: How Wounds to Our Skin Heal

Posted on November 15, 2014  Comments (0)

This is an interesting webcast looking at how our bodies heal wounds to our skin.

Related: Science Explained: How Cells React to Invading VirusesTissue Regeneration in AnimalsScience Explained: Cool Video of ATP Synthase, Which Provides Usable Energy to UsLooking Inside Living CellsA Healthy Lifestyle is More About Health Care than the Sickness Management That We Call Health Care Is

Deinocheirus is a Totally Bizarre Dinosaur

Posted on November 8, 2014  Comments (0)

A very strange dinosaur has been uncovered, studied and explained by scientists. The dinosaur is from Mongolia about 70 million years ago.

“Deinocheirus is a totally bizarre dinosaur,” explains Phil Currie, professor and Canada Research Chair in Dinosaur Paleobiology at the University of Alberta. At 11 meters long and with an estimated weight of 6.4 tons, Deinocheirus was a behemoth to be sure—but hardly the giant tyrannosaur its massive arms may have suggested. Rather, the apparently disproportionately large forearms were more likely used for digging and gathering plants in freshwater habitats, or for fishing. Among its other unusual attributes are tall dorsal spines, truncated hoof-like claws on the feet to prevent sinking into muddy ground, and bulky hind legs that indicate it was a slow mover.

“Although the arms have been known since 1965 and have always aroused speculation because of their enormous size and sharp, recurving claws, we were completely unprepared for how strange this dinosaur looks,” says Currie. “It almost appears to be a chimera, with its ornithomimid-like arms, its tyrannosaurid-like legs, its Spinosaurus-like vertebral spines, its sauropod-like hips, and its hadrosaur-like duckbill and foot-hooves.”

Currie notes that Deinocheirus is a descendant of ostrich-like dinosaurs that were only slightly larger than humans, so its evolution into a giant, multi-tonne creature is almost certainly responsible for most of its unusual characteristics. “Its great size probably gave it some protection from the tyrannosaurid Tarbosaurus, which appears to have been relatively common in that part of Mongolia some 70 million years ago,” says Currie. To feed its great bulk, Deinocheirus was apparently an omnivore that ingested both plants and fish, as evident from fish remains found in its stomach contents.

“The study of this specimen has shown that even in dinosaurs like Deinocheirus, an animal that has been known for almost half a century, we can still learn surprising things about their anatomy,” says Currie. “Furthermore, it underlines the fact that even today, dinosaurs are still relatively poorly known. The fact that Deinocheirus is from the Nemegt Formation of Mongolia, one of the richest and most diverse dinosaur faunas known, hints that there are probably thousands of dinosaurs that we still do not know about from the majority of dinosaur localities in the world.”

Including poached dinosaur bones (stealing bones has long been a problem to the advancement of science) with the existing bones available to scientists allowed the new understanding of this amazing dinosaur. The now near-complete Deinocheirus specimen has been returned to its home for further study in the Mongolia Centre for Paleontology.

Full press release

Related: Ancient Whale Uncovered in Egyptian DesertNigersaurus, the Mesozoic CowDinosaur Remains Found with Intact Skin and TissueLobopodians from China (“the walking cactus” – an animal)Korea-Mongolia International Dinosaur Project

RoboBoat 2014 – Student Designed Autonomous Boats

Posted on November 1, 2014  Comments (3)

The first video gives a recap of RoboBoat 2014. In 2014, Embry-Riddle Aeronautical University took 1st place. University of Florida was 2nd, followed by the Robotics Club at UCF and in 4th place the Georgia Institute of Technology.

The teams must design and build an autonomous boat to compete in challenges. During the competition, student teams race their autonomous surface vehicles through an aquatic obstacle course. This includes littoral area navigation, channel following, and autonomous docking. The competition provides an opportunity for students to develop skills in system engineering by accomplishing realistic missions with autonomous vehicles in the maritime environment.

A team participated from Diponegoro University, Semarang, Indonesia, which is next to me – though about as far from the finals as you can be on the globe.

Related: 9th International Autonomous Underwater Vehicle Competition20th Annual US First Robotics CompetitionBotball 2009 FinalsRobo-One Grand Championship in Tokyo (2007)Eco-Vehicle Student Competition

Read more

Apples Increase the Growth of Beneficial Bacteria in Our Guts, Which Improves Our Health

Posted on October 25, 2014  Comments (2)

Science provides some very clear knowledge that is easy for us to apply (the value of vaccines, materials to use in solar panels, support needed to build a bridge, dangers of consuming small amounts of lead…). But much of our knowledge about nutrition and human health is a bit unclear. This is one of the struggles we face is using our judgement to decide how to eat and live based on what we know and what seems to be so.

Eating more fruit and vegetables than most in the USA eat is pretty clearly beneficial to our health. but exactly how much, how beneficial, how it is beneficial are questions with only varying degrees of good answers so far. Apple’s Scientists at Washington State University have concluded that nondigestible compounds in apples – specifically, Granny Smith apples – may help prevent disorders associated with obesity.

“We know that, in general, apples are a good source of these nondigestible compounds but there are differences in varieties,” said food scientist Giuliana Noratto, the study’s lead researcher. “Results from this study will help consumers to discriminate between apple varieties that can aid in the fight against obesity.”

The tart green Granny Smith apples benefit the growth of friendly bacteria in the colon due to their high content of non-digestible compounds, including dietary fiber and polyphenols, and low content of available carbohydrates. The non-digestible compounds are fermented by bacteria in the colon, which benefits the growth of friendly bacteria in the gut.

The study showed that Granny Smith apples surpass Braeburn, Fuji, Gala, Golden Delicious, McIntosh and Red Delicious in the amount of nondigestible compounds they contain.

Read more

Appropriate Technology and Focus on Improving Lives at MIT

Posted on October 18, 2014  Comments (0)

I have written about the D-lab at MIT founded by Amy Smith. This is just a reminder of all the good stuff they are doing. The D-Lab is building a global network of innovators to design and disseminate technologies that meaningfully improve the lives of people living in poverty. The program’s mission is pursued through interdisciplinary courses, technology development, and community initiatives, all of which emphasize experiential learning, real-world projects, community-led development, and scalability.

Another of their initiatives, the International Development Innovators Network seeks to create low-cost, high-impact technologies and ventures, while simultaneously documenting and evaluating approaches to international development that value local ingenuity and innovation. This effort includes design summits, innovation centers, business incubators, and a growing network of over 400 innovators in 50 countries.

D-Lab’s Youth Outreach Program focuses on Hands-on Invention Education and works with primary and secondary school teachers to develop curricular materials that build the confidence and skills needed by the next generation of innovators from around the world. Together with students and educators from around the world, D-Lab is developing and delivering hands-on curricula aimed at youth that utilize affordable locally available resources.

The program continues to help develop and deploy great products that are meeting the needs to people around the world.

The Leveraged Freedom Chair, is an all-terrain wheelchair designed for the harsh terrain faced by people with disabilities in developing countries.

Read more

Ocean Exploration – Live Feed and Highlights

Posted on October 11, 2014  Comments (0)

Nautilus Live provides a live view of the E/V Nautilus as it explores the ocean studying biology, geology, archeology, and more. The site also includes highlights such as this video of a siphonophore.

Siphonophores are actually made up of numerous animals even though they look like one animal. These amazing colonial organisms are made up up many smaller animals called zooids, and can be found floating around the pelagic zone in ocean basins. The Portugese Man O’ War is a famous siphonophore.

Each zooid is an individual, but their integration with each other is so strong, the colony attains the character of one large organism. Indeed, most of the zooids are so specialized, they lack the ability to survive on their own.

Related: Giant Star Fish and More in AntarcticaHydromedusae, Siphonophora, Cnidarians, Ctenophores (what are jellyfish?)Macropinna Microstoma: Fish with a Transparent HeadLarge Crabs Invading Antarctic as Waters Warm

Here is another video from Nautilus, showing a large dumbo octopus:

Read more

STEM Graduates in the USA: 465,000 Women and 451,000 Men

Posted on October 4, 2014  Comments (0)

STEM baccalaureate degrees in the USA in 2010 (reported by NSF in 2014):

Field Women
  
Men
Science (including math) 442,000 343,000
Engineering 23,000 108,000
Health 193,000 36,000
Total 658,000 586,000



If you exclude health, women still lead 465,000 to 451,000.

The same data for master’s degrees:

Field Women
  
Men
Science (including math) 86,000 72,000
Engineering 14,000 49,000
Health 97,000 22,000
Total 197,000 147,000



Excluding health the totals are: women 100,000, men 125,000.

In 2005, 235,197 women received undergraduate science and engineering degrees, compared to 230,806 for men. In 2005, 53,051 women received masters science and engineering degrees, compared to 66,974 men. All increased a large amount from 2005 to 2010 and degrees awarded to women increased much faster than the increase seen for men.

As I predicted in 2008 (Women Choosing Other Fields Over Engineering and Math) the trends continued and resulted in large imbalances in favor of women at the undergraduate level for science related degrees.

At the masters level women continue to increase degrees (nearly doubling from 2005 to 2010 excluding health). The relative gains (compared to men) at the masters level are small in that 5 year period, but it seems to me the news is mainly good. I expect women will show relative gains at the masters and PhD levels going forward, though those gains may well be slower than they were at the undergraduate level.

STEM fields continue to show large gender imbalances (with women and men dominating certain fields and being relatively rare in others). Continuing to provide opportunities for talented and interested students to explore their field of choice is important for the students well being and for the well being of society. We want to take advantage of the great minds we have and not have people excluded from pursuing their dreams.

Related: Alternative Career Paths Attract Many Women in Science FieldsThe USA is Losing Scientists and Engineers Educated in the USA

Lots of Bacteria are Always Living in Our Bodies

Posted on September 27, 2014  Comments (0)

My response to a question on Reddit – Ask Science:

Let’s say you get infected with a bacterium that causes annoying, but totally non-dangerous symptoms. If you just try to “live with it,” will your immune system eventually kill it, or does killing bacteria require antibiotics in all cases?

Your body definitely kills lots of bacteria.

Your body also has tons of bacteria all the time (many doing much more good than they do harm). These bacteria also compete with each other.

So your “existing” bacteria kill off others all the time too (you have lots of different types of bacteria full time in your body – they often settle into niches and fight off any others , which is normally good as they are long term residents your body has learned to live with them).

Also like everything bacteria die off themselves – though if the conditions are right they are multiplying like crazy so that exceeds die off.

An astonishing number and variety of microbes, including as many as 400 species of bacteria, help humans digest food, mitigate disease, regulate fat storage, and even promote the formation of blood vessels.

According to estimates, phages destroy up to 40 percent of the bacteria in Earth’s oceans each day.

Staphylococcal food poisoning – an example of bacteria infection my body dealt with quickly.

People talk about genetics impact on getting cavities and impact of brushing and flossing well. Also the makeup of bacteria can help or hurt. If your mouth is home to certain bacteria tooth decay is less likely, home to others it is more likely. They tend to remain fairly steady (a certain makeup of bacteria will be consist for a person over the long term – not perfectly that way but tend that way). A UCLA microbiologist developed a mouthwash to try and ceed your mouth with good bacteria and oust the bad guys.

Related: People Have More Bacterial Cells than Human CellsHuman Gene Origins: 37% Bacterial, 35% Animal, 28% Eukaryotic

Epigenetics, Scientific Inquiry and Uncertainty

Posted on September 20, 2014  Comments (0)

Science is full of fascinating ideas. Epigenetics is one area I find particularly interesting. This previous post has a few links to learning more: DNA Passed to Descendants Changed by Your Life.

Angela Saini is one 109 people I follow on Twitter. I don’t see the point in “following” people on Twitter that you have no interest in, I only follow the small number of people that post Tweets I want to read.

In, Epigenetics: genes, environment and the generation game, Angela Saini looks at the confused state of current scientific understand now. It is very difficult to tell if, and if so, to what extent, epigenetic inheritance happens in people.

Professor Azim Surani, a leading developmental biologist and geneticist at the University of Cambridge, adds that while there is good evidence that epigenetic inheritance happens in plants and worms, mammals have very different biology. Surani’s lab carried out thorough studies on how epigenetic information was erased in developing mouse embryos and found that “surprisingly little gets through” the reprogramming process.

Professor Timothy Bestor, a geneticist at Columbia University in New York, is far more damning, claiming that the entire field has been grossly overhyped. “It’s an extremely fashionable topic right now. It’s very easy to get studies on transgenerational epigenetic inheritance published,” he says, adding that all this excitement has lowered critical standards.

Related: Epigenetic Effects on DNA from Living Conditions in Childhood Persist Well Into Middle AgeMedical Study Findings too Often Fail to Provide Us Useful KnowledgeScientific Inquiry Process Finds That Komodo Dragons Don’t have a Toxic Bite After All

Read more

Nutrition and Digestion in Horses

Posted on September 18, 2014  Comments (2)

Unlike cattle which have several stomachs (and there own interesting digestion system), horses have only one stomach. Like cattle their natural diet is grass. With feed provided by people, horses can run into issues they don’t experience from their natural diet. Fresh grass is fibrous and slows down digestion. If feed is used the feeding should be spread out several times during the day, due to the horses digestive system.

image of the digestive system of a horse

image via eXtention. The next 4 paragraphs are slightly edited quotes from the link.

The small intestine is the main site of digestion and absorption of protein, energy, vitamins and minerals.

The cecum is located after the small intestine of a horse and it functions much like the rumen of a cow (as a fermentative vat housing microbes which aid digestion). These microbes break down nutrient sources that would otherwise be unavailable to the horse.

The cecum and colon house bacterial, protozoal and fungal populations which function in microbial digestion of feed material in the digestive tract. Many different products of microbial digestion are absorbed by the horse.

Among other benefits, incorporating long-stem forage into rations increases particle size of ingested matter, thus slowing rate of passage. It also increases dry matter intake, thus stimulating water intake.

Nutrients and Common Feed Sources for Horses from the extension service (USA land grant universities)

Carbohydrates provide the majority of a horse’s energy. Non-structural carbohydrates, such as starch and glucose from grains and gums and pectins from fiber, are readily utilized as energy sources for the horse. The enzyme amylase breaks down non-structural carbohydrates into glucose and simple sugars, which are absorbed in the small intestine.

Structural carbohydrates, such as cellulose and hemicellulose in plants, can only be broken down by bacterial enzymes in the cecum and colon. The microorganisms convert these carbohydrates to volatile fatty acids (acetate, propionate, butyrate), which can provide 30 to 70 percent of the horse’s energy requirement.

Fibrous feeds are a very important part of the horse’s diet. They provide nutrients for both the horse and microbes in the hindgut as well as stimulate muscle tone and activity of the gastrointestinal tract.

Mineral supplements are usually required in the horse’s diet. Macrominerals are added to a horse’s diet to balance the ration to meet mineral requirements.

Human raised horses usually have some grazing but get some or much of there food needs from feed. Those feeds often supplement normal food for wild horses with beets, apples, carrots and other sources. In addition the horse food supplements include minerals, fiber and even pre-biotics and pro-biotics (just like our processed food does).

As a general rule, horses need 1 to 2 quarts (2 to 4 liters per kilogram) of water per pound of dry matter consumed. Of course, other factors can increase the water need, such as exercise (since it results in water loss through sweating).

Related: Great Webcast Explaining the Digestive SystemsEnergy Efficiency of DigestionTracking the Ecosystem Within Us