Science and Engineering: Innovation, Research, Education and Economics
December 31, 2008

Swarm of Yellowstone Quakes Baffles Scientists

Swarm of Yellowstone Quakes Baffles Scientists

Swarms of small earthquakes happen frequently in Yellowstone, but it’s very unusual for so many earthquakes to happen over several days, said Robert Smith, a professor of geophysics at the University of Utah. “They’re certainly not normal,” Smith said. “We haven’t had earthquakes in this energy or extent in many years.”

“There doesn’t seem to be anything to be alarmed about,” Vallie said. Smith said it’s difficult to say what might be causing the tremors. He pointed out that Yellowstone is the caldera of a volcano that last erupted 70,000 years ago.

Yellowstone has had significant earthquakes as well as minor ones in recent decades. In 1959, a magnitude 7.5 quake near Hebgen Lake just west of the park triggered a landslide that killed 28 people.

So far the most powerful quake over the last few days has been one at 3.8 on the Richter scale. An earthquake of 4.0-4.9 “Noticeable shaking of indoor items, rattling noises. Significant damage unlikely.” The Richter scale is a logarithmic scale, meaning a measure of 4.0 is 10 times as powerful as 3.0 quake, and 5.0 is 100 times more powerful than a 3.o quake.

Related: Scientists Chart Record Rise in Yellowstone Caldera (2007) - Yellowstone Is Rising on Swollen “Supervolcano” - Live earthquake measurements at Yellowstone - Quake Lifts Island Ten Feet Out of Ocean - Wabash Valley, Illinois Earthquakes

December 30, 2008

Learning About the Moon

Planetary scientist Jennifer Heldmann discusses the Moon. From Fora.tv which has a wide selection of great webcasts.

Related: Science and Engineering Webcast Directory - China Reaches for the Moon - Astronomers Find a Planet Denser Than Lead - Studying Martian Soil for Evidence of Microbial Life - Cool Astronaut photo

Open Source Abandoned by OLPC

Not Free at Any Price by Richard M. Stallman

When the OLPC appeared, it fell one step short of full freedom: the highly publicized wireless mesh network device, which allows OLPCs to connect to the Internet through nearby OLPCs, required a non-free program. This piece of non-free code prevented me from fully endorsing the OLPC. But that would not stop me from using one: I would just have to delete the non-free code and do without the internal wireless device.

The OLPC had practical inconveniences, too: no internal hard disk, a small screen, and a tiny keyboard. In December 2007 I test-drove the OLPC with an external keyboard, and concluded I could use it with an external disk despite the small screen. I decided to switch.

If you want to support a venture to distribute low-priced laptops to children, wait a few months, then choose one that donates MIPS-based machines that run entirely free software. That way you can be sure to give the gift of freedom.

He is more anti-microsoft than I am but I agree with this contention that what we should support is a open source solution to provide laptops to children around the world. It is a shame, I really liked the potential for OLPC. I still wish them success I just am not interesting in directly supporting that effort but instead would like an alternative open source solution.

The Sylvania Netbook is available from Amazon now with the Ubuntu operating system (linux version). I use Ubuntu and it is excellent.

Related: Will Desktop Linux Take Off? - Lemote (fully open source laptop) - 13 Things For Ubuntu - posts on Ubuntu - Great Freeware - One Laptop Per Child - Give One Get One - OLPC’s Open Source Rift Deepens

December 29, 2008

The Year in Bad Science

The Year in Bad Science Ben Goldacre reviews some of the science lowlights of the year.

In a world where rigorous evidence from scientific research languishes unpublicised, the media continued to churn out bogus wacky science stories. Britain’s happiest places were mapped by “scientists”, although the differences were just chance findings; there were innumerable “surveys” from unrepresentative populations; and the right wing press claimed that “Lord Nelson and Captain Cook’s ship logs question climate change theories,” although they did nothing of the sort, as the researchers themselves helpfully explained. We saw how the BBC misrepresented the statistics on parents’ choices about keeping a Down’s Syndrome pregnancy, producing their a publicity avalanche on the back of an incorrect story, and learnt along the way about confounding variables, baseline changes, and more.

In the world of evidence based social policy we saw how the government quietly dropped death as an outcome indicator for their drugs policy, the fascinating inconsistencies in food additive judgment calls, and more. We also watched with delight as right-wing think tank Reform produced a report on the crisis in maths in which they got their maths wrong.

Related: Illusion of Explanatory Depth - The Most Trusted Sources in Science - Seeing Patterns Where None Exists - Bigger Impact: 15 to 18 mpg or 50 to 100 mpg? - Poor Reporting and Unfounded Implications

Rethinking the Food Production System

wineberriesphoto by John Hunter of wine-berries from his Garden.

Food needs ‘fundamental rethink’

The new approach needed to address key fundamentals like biodiversity, energy, water and urbanisation, he added.

Water scarcity: “One of the key things that I have been pushing is to get the UK government to start auditing food by water,” Professor Lang said, adding that 50% of the UK’s vegetables are imported, many from water-stressed nations.
Biodiversity: “Biodiversity must not just be protected, it must be replaced and enhanced; but that is going to require a very different way growing food and using the land.”

“In Europe, 30% of the food grown did not appear on the shelves of the retailers because it was a funny shape or odd colour.

“The way that seeds are selected is about immunity to any known disease; they have also got to grow big and fast, and have a fantastic shelf life. “Never mind taste, texture or nutrition, it is all about how it looks.

I agree. The food system is broken. We have moved to mono-culture food production. We have changed our diets to eat food like concoctions. We need to return to healthier and sustainable food production.

Related: Grow Your Own Food and Save Money - Protecting the Food Supply - Eat food. Not too much. Mostly plants. - The Science of Gardening - Pigs Instead of Pesticides - Obesity Epidemic Explained - Kind Of

December 28, 2008

Educating the Biologist of the 21st Century

An Introductory Science Curriculum for 21st Century Biologists by David Botstein (webcast)

At Princeton’s new Lewis-Sigler Institute, Botstein is spearheading an innovative effort at interdisciplinary undergraduate education. Students will take advantage of state of the art laboratories and computers capable of crunching vast amounts of data generated by actual research. Professors will “provide essential fundamental concepts as required, using the just-in-time-principle” - no more of the “learn this now, it will be good for you later” approach, which Botstein likens to hazing. Botstein says there is “lots of overhead in teaching historical and traditional origins” so his students will learn instead “with ideas and technologies of today.” He wants to create a new basic language that will enable his biology students to make sense of the fundamental issues of other disciplines.

Very good look at future of biology education.

Related: MIT Faculty Study Recommends Significant Undergraduate Education Changes - The Importance of Science Education - Webcast: Engineering Education in the 21st Century - Educating the Engineer of 2020: NAE Report

December 27, 2008

High School Students to Intern in Engineering

Pasco high school students to work as interns in engineering

Five area manufacturers announced Tuesday that they will join forces with River Ridge High’s new engineering career academy, which opens in fall 2009, to provide students work opportunities while they are still in school.

“The idea is to start a program of internships starting in the 10th grade,” said Wahnish, who presents the idea to the Florida Engineering Society today.

By the time graduation rolls around, students will have had three six-week apprenticeships and received industry certifications in computer-assisted design and other applications. They also will be ready to go to work or enroll in a university program. Even those who go to work still would attend college at least two days a week.

Related: Engineering Internship Openings - Summer Jobs for Smart Young Minds - Toyota Cultivating Engineering Talent - Internships Increasingly Popular - careers in science and engineering

December 26, 2008

Brain Reorganizes As It Learns Math

Brain reorganizes to make room for math

It takes years for children to master the ins and outs of arithmetic. New research indicates that this learning process triggers a large-scale reorganization of brain processes involved in understanding written symbols for various quantities.

The findings support the idea that humans’ ability to match specific quantities with number symbols, a skill required for doing arithmetic, builds on a brain system that is used for estimating approximate quantities. That brain system is seen in many nonhuman animals.

When performing operations with Arabic numerals, young adults, but not school-age children, show pronounced activity in a piece of brain tissue called the left superior temporal gyrus, says Daniel Ansari of the University of Western Ontario in London, Canada. Earlier studies have linked this region to the ability to associate speech sounds with written letters, and musical sounds with written notes. The left superior temporal gyrus is located near the brain’s midpoint, not far from areas linked to speech production and understanding.

In contrast, children solving a numerical task display heightened activity in a frontal-brain area that, in adults, primarily serves other functions.

Related: Brain Development - The Brain Hides Information From Us To Prevent Mistakes - How The Brain Rewires Itself - posts about brain research

Friday Cat Fun #10: Cat and Crow Friends

Very cool, it is amazing what happens in life. And that bird is remarkably patient. Getting, even playfully, ambushed by a cat doesn’t seem like something what would come naturally. At least with polar bears and huskies they both are used to playing rough with their own.

Related: fun with cats - Bunny and Kittens - Bird Brains: thinking crows - Photos by Fritz the Cat - animal planet on the cat and crow

December 25, 2008

Appropriate Technology: Self Adjusting Glasses

Self Adjusting Glasses for 1 billion of the world’s poorest see better

What if it were possible, he thought, to make a pair of glasses which, instead of requiring an optician, could be “tuned” by the wearer to correct his or her own vision? Might it be possible to bring affordable spectacles to millions who would never otherwise have them?

More than two decades after posing that question, Josh Silver [a physics professor at Oxford] now feels he has the answer. The British inventor has embarked on a quest that is breathtakingly ambitious, but which he insists is achievable - to offer glasses to a billion of the world’s poorest people by 2020.

Some 30,000 pairs of his spectacles have already been distributed in 15 countries, but to Silver that is very small beer. Within the next year the now-retired professor and his team plan to launch a trial in India which will, they hope, distribute 1 million pairs of glasses. The target, within a few years, is 100 million pairs annually.

Silver has devised a pair of glasses which rely on the principle that the fatter a lens the more powerful it becomes. Inside the device’s tough plastic lenses are two clear circular sacs filled with fluid, each of which is connected to a small syringe attached to either arm of the spectacles.

The wearer adjusts a dial on the syringe to add or reduce amount of fluid in the membrane, thus changing the power of the lens. When the wearer is happy with the strength of each lens the membrane is sealed by twisting a small screw, and the syringes removed. The principle is so simple, the team has discovered, that with very little guidance people are perfectly capable of creating glasses to their own prescription.

Oxford University, at his instigation, has agreed to host a Centre for Vision in the Developing World, which is about to begin working on a World Bank-funded project with scientists from the US, China, Hong Kong and South Africa. “Things are never simple. But I will solve this problem if I can. And I won’t really let people stand in my way.”

Cool. A couple points I would like to make:

1) this professor is making a much bigger difference in the “real world” than most people ever will. The idea that professors are all lost in insignificant “ivory towers” is a very inaccurate view of what really happens.
2) Spending money on this kind of thing seems much more important for the human race than spending trillions to bail out poor moves by bankers, financiers… It sure seems odd that we can’t find a few billion to help out people across the globe that are without basic necessities yet we can find trillions to bail out the actions of few thousand bad actors.

Related: Adaptive Eyecare - Bringing Eye Care to Thousands in India - River Blindness Worm Develops Resistance to Drugs - Strawjet: Invention of the Year (2006) - Fixing the World on $2 a Day - Appropriate Technology

December 24, 2008

Making Embryonic Stem Cells

photo of Junying Yuphoto of Junying Yu, an assistant scientist with the University of Wisconsin-Madison by Bryce Richter, 2007.

Holy Grail of stem cell research within reach by Mark Johnson

It was time to test the 14 genes she had selected as the best candidates to reprogram a cell.

Using viruses to deliver the genes, she inserted all 14 at once into human cells. On the morning of July 1, 2006, Yu arrived at the lab and examined the culture dishes. Her eyes focused on a few colonies, each resembling a crowded city viewed from space. They looked like embryonic stem cells.

Cells must pass certain tests. They must multiply for weeks while remaining in their delicate, primitive state. When they are allowed to develop, they must turn into all the other cell types.

Bad things happen. Cells develop too soon. Cells die. There is no “aha!” moment, Thomson has said, only stress. He looked at the colonies and suppressed any excitement. He told Yu, essentially: OK, well get back to me in a couple of weeks.

In the fall of 2006, Yu was preparing to whittle down her list of genes when she fell ill. The pain in her gut was awful. She struggled to eat. Her doctor thought it was a stomach flu. Instead, in late October, Yu’s appendix burst. She was laid up for a month. When she returned to the lab, the problem with the culture medium struck again.

Not until January 2007 was she able to begin narrowing the list of genes. She spent several months testing subsets of them, finally arriving at four. Two, Oct4 and Sox2, were “Yamanaka factors,” the name given to the genes the Japanese scientist had used to reprogram mouse cells. Two, Nanog and Lin28, were not.

Using a virus to deliver the four genes, she reprogrammed a line of fetal cells, then repeated the experiments with more mature cells. Although the process was inefficient, succeeding with only a small fraction of cells, it did work.

Dr. Junying Yu, an American trained scientist who entered the US as a foreign student from China. Which is somewhat ironic given the movement of USA based stem cell researches to China. Great article showing the process of scientific inquiry.

Related: Junying Yu, James Thomson and Shinya Yamanaka (Time people who mattered 2007) - Discovery leaps legal, financial and ethical hurdles facing stem cells - Edinburgh University $115 Million Stem Cell Center - Stanford Gets $75 Million for Stem Cell Center - posts relating to Madison, Wisconsin

Scientists Learn More About Spider Evolution

Tangled web of spider evolution

It seems that Attercopus is a missing link, capable of producing silk but not of weaving it. “The thing that had been called the oldest known spider we have now shown is in fact more primitive than a true spider,” Professor Selden told BBC News.

“They’re all microscopic fragments. What you’ve got is a jigsaw puzzle, with half the pieces and no picture on the box lid,” Professor Selden said. “You don’t know what it’s going to be if you haven’t got all the pieces, so having these additional pieces means it changed the idea of what it was.” The finding is important for evolutionary biologists trying to unravel the origin of spider silk.

“The puzzle about silk was this: we knew that it wasn’t used for making webs initially, for catching insects, because there were no flying insects when the earliest spiders were around,” Professor Selden said.

“Here we clearly have a spider-like animal that could produce silk but didn’t yet have these flexible spinnerets for weaving it into webs; we think that this sort of spider would leave a trail of silk as it moved along, using it to find its way back to its burrow.”

Another great example of scientists incorporating new information and adjusting their understanding of what they are studying.

Related: 60 Acre (24 hectare) Spider Web - Spider Thread - Dinosaur Remains Found with Intact Skin and Tissue - Secrets of Spider Silk’s Strength

December 23, 2008

Octopuses Give Eight Thumbs up to HDTV

Octopuses give eight thumbs up for high-def TV

“Octopuses,” Miss Pronk said, “are very smart. I have seen my octopuses open Vegemite jars by unscrewing the lid. They can find their way through mazes to reach food rewards at the end. “And they can learn simple puzzles”, recognising that symbols, such as squares or circles, mean food is available.

When the crab movie was screened “they jetted straight over to the monitor and tried to attack it”, she said, adding that was strong evidence they knew they were watching food.

When the octopus movie was screened some became aggressive while others changed their skin camouflage or “would go and hide in a corner, moving as far away as possible”.

On viewing the swinging bottle, some puffed themselves up, just in case the object was a threat, while others paid no attention.

But significantly, when the experiment was repeated over several days, she found no consistent response from any octopus. Such random responses implied octopuses have no individual personalities.

She suspected previous efforts to show movies to octopuses failed because their sophisticated eyes were too fast for the 24-frame per second format of standard-definition video.

Related: Octopus Juggling Fellow Aquarium Occupants - Red Octopus in Brine Lake Beneath the Sea - Randomization in Sports - Curious Cat Science Search

December 22, 2008

Online Education in Science, Engineering and Medicine

The National Academies state that they want to develop websites, podcasts, and printed information featuring the topics in science, engineering, and medicine that concern you the most, and that you’d like to understand better. Great. I am very disappointed in how little great material is available now (from them, and others).

Fill out their survey and hope they hire some people that actually understand the web. I must say the survey seems very lame to me.

The internet provides a fantastic platform for those that have an interest in increasing scientific literacy. But there is still very little great material available. There are a few great resources but there should be a great deal more. The National Academies of Science have a particularly stilted web presence - it is as though the web were just a way to distribute pages for people to print out. Though they are very slowly getting a bit better, adding a small amount of podcasts, for example. While hardly innovative, for them, it is a step into the 21st century, at least.

Some of the good material online: Public Library of Science - Science Blogs - Encyclopedia of Life - The Naked Scientists - Berkeley Course Webcasts - BBC Science News - MIT OpenCourseWare (though it is very lacking in some ways at least they are trying) - TED - Mayo Clinic - Nobel Prize - SciVee

It seems to me universities with huge endowments (MIT, Harvard, Yale, Standford…), government agencies (NSF, National Academies), museums and professional societies should be doing much more to create great online content. I would increase funding in this area by 5 to 10 times what is currently being dedicated right now, and probably much more would be wise. I believe funding this would be most effective way to spend resources of those organizations on what they say they want to support.

Social Amoeba

Amoebic Morality by Carol Otte

At first their behavior might seem odd; to gather together in the face of starvation surely ought to end in cannibalism or death. Not so, for they are capable of an extraordinary and rare transformation. The amoebas set aside their lives as individuals and join ranks to form a new multicellular entity. Not all the amoebas will survive this cooperative venture, however. Some will sacrifice themselves to help the rest find a new life elsewhere.

These astonishing creatures are Dictyostelium discoideum, and they are a member of the slime mold family. They are also known as social amoebas. Aside from the novelty value of an organism that alternates between unicellular and multicellular existence, D. discoideum is highly useful in several areas of research. Among other things, this organism offers a stellar opportunity to study cell communication, cell differentiation, and the evolution of altruism.

In response to the cAMP distress call, up to one hundred thousand of the amoebas assemble. They first form a tower, which eventually topples over into an oblong blob about two millimeters long. The identical amoebas within this pseudoplasmodium– or slug– begin to differentiate and take on specialized roles.

Another cool example of how life has evolved novel solutions to perpetuate genes.

Related: Thinking Slime Moulds - Be Thankful for Marine Algae - How Bacteria Nearly Destroyed All Life

1,000 Species Discovered in Greater Mekong in Last Decade

photo of Gumprechts Green PitviperPhotograph of Gumprechts Green Pitviper courtesy Greater Mekong Programme/WWF International

While most species were discovered in the largely unexplored jungles and wetlands, some were first found in the most surprising places. The Laotian rock rat, for example, thought to be extinct 11 million years ago, was first encountered by scientists in a local food market, while the Siamese Peninsula pitviper was found slithering through the rafters of a restaurant in Khao Yai National Park in Thailand.

“This region is like what I read about as a child in the stories of Charles Darwin,” said Dr Thomas Ziegler, Curator at the Cologne Zoo. “It is a great feeling being in an unexplored area and to document its biodiversity for the first time… both enigmatic and beautiful,” he said.

The findings, highlighted in this report, include 519 plants, 279 fish, 88 frogs, 88 spiders, 46 lizards, 22 snakes, 15 mammals, 4 birds, 4 turtles, 2 salamanders and a toad. The region comprises the six countries through which the Mekong River flows including Cambodia, Lao PDR, Myanmar, Thailand, Vietnam and the southern Chinese province of Yunnan. It is estimated thousands of new invertebrate species were also discovered during this period, further highlighting the region’s immense biodiversity.

“It doesn’t get any better than this,” said Stuart Chapman, Director of WWF’s Greater Mekong Programme. “We thought discoveries of this scale were confined to the history books. This reaffirms the Greater Mekong’s place on the world map of conservation priorities.”

The report stresses economic development and environmental protection must go hand-in-hand to provide for livelihoods and alleviate poverty, and ensure the survival of the Greater Mekong’s astonishing array of species and natural habitats.

Full press release. I am a World Wildlife Fund member.

Related: First Contact in the Greater Mekong (8 Mb pdf) - Massive Gorilla Population Found - 2,000 Species New to Science from One Island - Giant Star Fish and More in Antarctica - Huge Ant Nest - Why the Frogs Are Dying

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